tony-kuo / eagleLinks
☆22Updated last year
Alternatives and similar repositories for eagle
Users that are interested in eagle are comparing it to the libraries listed below
Sorting:
- Simple pileup-based variant caller☆93Updated 6 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆75Updated 4 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆33Updated 2 weeks ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- ☆45Updated 8 years ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Updated 2 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆59Updated last week
- A pipeline that accepts a VCF file to run through Admixture☆63Updated 10 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- SRF: Satellite Repeat Finder☆99Updated last year
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- PacBio BAM toolkit☆46Updated 8 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆26Updated 5 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆32Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 10 months ago
- TransposonUltimate - a holistic set of tools for transposon identification☆84Updated 3 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆113Updated 4 months ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- A (very) simple script to QC Hi-C data.☆26Updated 10 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- A program for assessing the T2T genome continuity☆89Updated last month
- Toolkit for calling structural variants using short or long reads☆110Updated last month
- Conditional Reciprocal Best Blast☆42Updated 8 years ago