Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
☆59Aug 9, 2015Updated 11 years ago
Alternatives and similar repositories for argweaver
Users that are interested in argweaver are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE).☆16Updated this week
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- ☆35Nov 11, 2025Updated 10 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆20Jun 15, 2024Updated 2 years ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆202Aug 17, 2026Updated last month
- Tools for identifying introgressed archaic sequence.☆12Jun 20, 2017Updated 9 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 4 years ago
- Identification of segmental duplications in the genome☆29Mar 1, 2022Updated 4 years ago
- Software for detecting introgression using supervised machine learning☆21Nov 21, 2022Updated 3 years ago
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated last year
- A package for population structure inference from RAD-seq data☆36May 14, 2021Updated 5 years ago
- Taxonomy-aware DNA sequence processing toolkit☆34Jun 7, 2026Updated 3 months ago
- ☆15Jul 17, 2019Updated 7 years ago
- Software for estimating genome-wide genealogies for thousands of samples☆46May 19, 2026Updated 4 months ago
- ARG-based inference of selection using deep learning☆18Aug 31, 2023Updated 3 years ago
- Python package for detecting positive selective sweeps using time-series genomics sampling data.☆21Apr 9, 2024Updated 2 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆191Dec 19, 2024Updated last year
- ☆49Sep 5, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Sampling and inference of genealogies with recombination☆63Aug 21, 2026Updated last month
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆12Nov 25, 2024Updated last year
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 13 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Sep 8, 2026Updated 2 weeks ago
- ☆10Jan 18, 2023Updated 3 years ago
- The SPrime program identifies variants that are introgressed from archaic populations.☆32May 21, 2022Updated 4 years ago
- This is a phylogeny workflow for batch submission to HPC cluster built with Slurm queue manager☆12Mar 19, 2024Updated 2 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 3 years ago
- Infer a tree sequence from genetic variation data.☆65Sep 8, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- Population-scale Ancestral Recombination Graph (ARG) library☆190Sep 14, 2026Updated last week
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Aug 17, 2026Updated last month
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆75Apr 9, 2026Updated 5 months ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆28Oct 29, 2020Updated 5 years ago
- Hybridization detection using phylogenetic invariants☆53Oct 29, 2024Updated last year