mdrasmus / argweaverLinks
Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
☆57Updated 10 years ago
Alternatives and similar repositories for argweaver
Users that are interested in argweaver are comparing it to the libraries listed below
Sorting:
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated 2 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- ☆64Updated 2 years ago
- A reimplementation of a classical PSMC method in python for educational purposes☆16Updated last year
- genotype dimensionality reduction with a VAE☆47Updated 7 months ago
- machine learning applications for dadi☆15Updated 9 months ago
- Tools and Utilities for msmc and msmc2☆48Updated 2 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆13Updated 2 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated last month
- A program for the Maximum-likelihood analysis of population genomic data.☆30Updated 4 years ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆42Updated 3 months ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆54Updated 4 months ago
- ☆20Updated 5 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Sampling and inference of genealogies with recombination☆44Updated 4 months ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆52Updated 6 months ago
- ☆44Updated 7 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Code and binaries related to processing haplotagging data☆15Updated 3 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆64Updated last month
- ☆31Updated 2 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- deep learning prediction of geographic location from individual genome sequences☆51Updated 9 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- Infer a tree sequence from genetic variation data.☆60Updated last week
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago