A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.
☆12Nov 28, 2018Updated 7 years ago
Alternatives and similar repositories for bdskytools
Users that are interested in bdskytools are comparing it to the libraries listed below
Sorting:
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆17Apr 28, 2023Updated 2 years ago
- BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.☆21Aug 11, 2025Updated 6 months ago
- Utilities and distributions for (birth-death) skyline models.☆10Aug 27, 2019Updated 6 years ago
- R tools for posterior analyses using BEAST☆20Apr 10, 2019Updated 6 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated last year
- Main development repository for SpreadGL☆20Sep 30, 2024Updated last year
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆22Sep 20, 2022Updated 3 years ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Mar 5, 2023Updated 3 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- Create, modify and analyse phylogenetic trees in R☆23Feb 19, 2026Updated 2 weeks ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆24Jan 26, 2026Updated last month
- ☆23Feb 11, 2026Updated 3 weeks ago
- Programmatic R interface to the Neotoma Paleoecological Database.☆31Nov 30, 2022Updated 3 years ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 6 years ago
- A course in the theory and practice of phylogenetic inference from DNA sequence data☆31Feb 11, 2026Updated 3 weeks ago
- Automatically exported from code.google.com/p/densitree☆29Jul 27, 2025Updated 7 months ago
- BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts☆72Nov 17, 2025Updated 3 months ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 6 months ago
- An R package with toolkits for tong's friends☆11Mar 18, 2025Updated 11 months ago
- ☆16Aug 17, 2023Updated 2 years ago
- Measuring disparity with R☆29Jan 6, 2026Updated last month
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., submitted)☆37Feb 27, 2026Updated last week
- high resolution naturalearth data for rnaturalearth☆31Jul 5, 2025Updated 8 months ago
- Phylogenetic Comparative Tools for Missing Data and Within-Species Variation☆32Jan 15, 2023Updated 3 years ago
- An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)☆14Feb 4, 2026Updated last month
- A library of MATLAB functions for visualization, processing, and analysis of output from Bayesian models fit with Stan.☆10Dec 17, 2021Updated 4 years ago
- Flutrack platform gathers flu related tweets from the entire world, with searching tag, words that are influenza synonyms and flu symptom…☆13Apr 22, 2019Updated 6 years ago
- Import script needed to build FluPRINT database from source☆11May 23, 2019Updated 6 years ago
- Radiocarbon calibration command line tool and Haskell module☆11Nov 24, 2025Updated 3 months ago
- rhierbaps: R implementation of hierBAPS☆37Feb 23, 2026Updated last week
- Guidelines and forecasts for a collaborative U.S. influenza forecasting project.☆39May 4, 2020Updated 5 years ago
- ☆10Dec 8, 2021Updated 4 years ago
- ☆14Mar 8, 2024Updated last year
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- This package aims to generate phylogenetic trees for a list of species of plants or animals, based on an existent backbone phylogeny.☆13Nov 20, 2024Updated last year
- Postprocessing gadgets for output generated by RevBayes☆14Feb 22, 2026Updated last week
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- Bayesian estimation of the evolutionary rate matrix.☆10Dec 8, 2025Updated 2 months ago