schwartzlab-methods / too-many-cells-interactive
Interactive TooManyCells Trees
☆12Updated 2 months ago
Alternatives and similar repositories for too-many-cells-interactive:
Users that are interested in too-many-cells-interactive are comparing it to the libraries listed below
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated last year
- University of Cambridge PhD thesis☆15Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- Full annotation using shape-constrained trees☆25Updated last year
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆21Updated 7 months ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆18Updated 3 weeks ago
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- ☆19Updated 2 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Trans-association between HLA and TCR-CDR3☆15Updated last year
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- Mean Alterations Using Discrete Expression☆14Updated 10 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆34Updated this week
- An R/Bioconductor package to identify higher-order molecular phenotypes☆15Updated last year
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆22Updated last month
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 10 months ago
- Perturb-seq analysis package☆14Updated 10 months ago
- ☆29Updated last year
- BAGEL software☆27Updated last year
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- An interactive learning resource for next-generation sequencing (NGS) techniques☆28Updated 6 years ago
- Code related to scRNA analysis using the scAmpi workflow☆24Updated 3 months ago
- ☆18Updated 4 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 7 months ago