NygenAnalytics / CyteTypeLinks
Agentic Cell type annotation for Anndata objects
☆35Updated this week
Alternatives and similar repositories for CyteType
Users that are interested in CyteType are comparing it to the libraries listed below
Sorting:
- Multimodal Data (.h5mu) implementation for Python☆99Updated last month
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆100Updated 3 months ago
- Code and documentation for the curation of cellxgene datasets☆47Updated last week
- ☆55Updated last month
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆64Updated last year
- ☆44Updated last week
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆49Updated last month
- Using BCR and expression for sequence embedding☆23Updated last month
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆53Updated 10 months ago
- Multi-omics factor analysis v2☆46Updated 8 months ago
- ☆44Updated 8 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- Flow & mass cytometry analytics.☆53Updated last week
- CZ CELLxGENE Discover Census☆104Updated this week
- Geometry-preserving random sampling☆87Updated 8 months ago
- Functional Associations using Variational Autoencoders☆39Updated 5 months ago
- Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.☆108Updated this week
- A fast dataloader for bigwig files made for machine learning☆28Updated 2 months ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆90Updated this week
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆32Updated 3 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated this week
- AnnData interoperability in R☆84Updated this week
- Unified knowledge-driven network inference from omics data☆44Updated last week
- Registries for biological entities, coupled to public ontologies.☆16Updated last week
- Multi-modal single cell analysis pipelines☆59Updated this week
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆77Updated 2 months ago
- pseudobulking on an AnnData object☆32Updated 4 months ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆27Updated 7 months ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆54Updated last week