☆97Apr 16, 2026Updated 2 weeks ago
Alternatives and similar repositories for dayhoff
Users that are interested in dayhoff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein representation and design under a single training scheme☆24Updated this week
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- ☆16Dec 10, 2024Updated last year
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- ☆33Oct 14, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated 2 months ago
- ☆31Dec 12, 2024Updated last year
- ☆37Jun 17, 2025Updated 10 months ago
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Benchmarking scripts for Gaia☆15Apr 10, 2025Updated last year
- Implementation of methods to sample from Boltzmann distributions☆22Jan 24, 2023Updated 3 years ago
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆44Aug 5, 2025Updated 8 months ago
- ☆15Jan 27, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆126Apr 23, 2026Updated last week
- PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion☆13Jul 4, 2024Updated last year
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated last month
- Sidechain conditioning and modeling for full-atom protein sequence design☆138Nov 11, 2025Updated 5 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆125Aug 3, 2025Updated 8 months ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- ☆57Apr 15, 2026Updated 2 weeks ago
- ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model☆204Feb 14, 2026Updated 2 months ago
- Metrics to evaluate distributional coverage of generative models of protein structures.☆21Aug 13, 2025Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆118Dec 7, 2022Updated 3 years ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆228Jan 3, 2026Updated 3 months ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆191Jun 24, 2024Updated last year
- Official repository for DiffPepBuilder and DiffPepDock tools☆125Oct 24, 2025Updated 6 months ago
- Official repository for the paper "Peptide design through binding interface mimicry with PepMimic" accepted by Nature Biomedical Engineer…☆32Oct 20, 2025Updated 6 months ago
- Adapting protein language models for structure-conditioned design☆42Aug 5, 2024Updated last year
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆78Feb 24, 2025Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆152Apr 16, 2025Updated last year
- Structure prediction and design of proteins with noncanonical amino acids☆130Feb 1, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Apr 13, 2026Updated 2 weeks ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 5 months ago
- [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.☆46Nov 14, 2025Updated 5 months ago
- ESMDynamic repo☆22Updated this week
- Learning the language of protein-protein interactions☆145Apr 14, 2026Updated 2 weeks ago
- protein backbone refinement☆15Sep 12, 2024Updated last year
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆56Apr 10, 2025Updated last year