Alternatives and similar repositories for dayhoff

Users that are interested in dayhoff are comparing it to the libraries listed below

• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆127Updated 3 weeks ago
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆113Updated last week
• jonfunk21 / ProteusAI
  ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…
  ☆66Updated 4 months ago
• jwohlwend / minifold
  MiniFold: Simple, Fast and Accurate Protein Structure Prediction
  ☆82Updated 6 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆117Updated 6 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆72Updated 2 months ago
• rohitsinghlab / raygun
  Template-based protein design with Raygun
  ☆76Updated this week
• AbSciBio / igdesign
  ☆47Updated last year
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆85Updated last year
• KULL-Centre / _2024_cagiada_stability
  ☆73Updated 10 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆56Updated 5 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆80Updated 4 months ago
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆36Updated 9 months ago
• GBLille / MassiveFold
  ☆107Updated 2 weeks ago
• anton-bushuiev / ProteinTTT
  One protein is all you need (ICLR 2026)
  ☆66Updated last month
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…
  ☆63Updated 3 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆78Updated 3 months ago
• rigdenlab / ABCFold
  Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.
  ☆101Updated last week
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆60Updated 3 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆61Updated 4 months ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆30Updated 10 months ago
• HySonLab / Directed_Evolution
  Protein Design by Machine Learning guided Directed Evolution
  ☆47Updated last month
• lehner-lab / MoCHI
  Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…
  ☆55Updated 9 months ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆50Updated 9 months ago
• yoakiyama / MSA_Pairformer
  ☆128Updated 2 weeks ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆46Updated 8 months ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆71Updated last year
• yehlincho / Protein-Hunter
  ☆110Updated this week
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆80Updated 11 months ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated last year