☆96Mar 17, 2026Updated this week
Alternatives and similar repositories for dayhoff
Users that are interested in dayhoff are comparing it to the libraries listed below
Sorting:
- Protein representation and design under a single training scheme☆24Mar 3, 2026Updated 2 weeks ago
- Finding patch of conserved amino acid sites in 3D structure☆13Apr 13, 2025Updated 11 months ago
- ☆16Dec 10, 2024Updated last year
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- ☆33Oct 14, 2024Updated last year
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated 3 weeks ago
- ☆31Dec 12, 2024Updated last year
- ☆36Jun 17, 2025Updated 9 months ago
- Structure-conditioned masked language modeling for protein sequence design☆72Jan 31, 2024Updated 2 years ago
- Benchmarking scripts for Gaia☆14Apr 10, 2025Updated 11 months ago
- Implementation of methods to sample from Boltzmann distributions☆21Jan 24, 2023Updated 3 years ago
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆44Aug 5, 2025Updated 7 months ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆124Jan 16, 2026Updated 2 months ago
- ☆15Jan 27, 2025Updated last year
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated last week
- PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion☆13Jul 4, 2024Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆122Aug 3, 2025Updated 7 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆137Nov 11, 2025Updated 4 months ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- ☆56Feb 16, 2026Updated last month
- ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model☆197Feb 14, 2026Updated last month
- Metrics to evaluate distributional coverage of generative models of protein structures.☆20Aug 13, 2025Updated 7 months ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆214Jan 3, 2026Updated 2 months ago
- ☆118Dec 7, 2022Updated 3 years ago
- Adapting protein language models for structure-conditioned design☆40Aug 5, 2024Updated last year
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆190Jun 24, 2024Updated last year
- Official repository for DiffPepBuilder and DiffPepDock tools☆119Oct 24, 2025Updated 4 months ago
- Official repository for the paper "Peptide design through binding interface mimicry with PepMimic" accepted by Nature Biomedical Engineer…☆28Oct 20, 2025Updated 5 months ago
- Structure prediction and design of proteins with noncanonical amino acids☆121Feb 1, 2026Updated last month
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆74Feb 24, 2025Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆150Apr 16, 2025Updated 11 months ago
- ☆18Feb 25, 2026Updated 3 weeks ago
- AlphaFast: ultra-high-throughput AlphaFold3 inference with MMSeqs2-GPU☆106Updated this week
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 4 months ago
- [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.☆46Nov 14, 2025Updated 4 months ago
- ESMDynamic repo☆22Feb 25, 2026Updated 3 weeks ago
- Learning the language of protein-protein interactions☆139Jan 12, 2026Updated 2 months ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆56Apr 10, 2025Updated 11 months ago