🧬 Large-scale protein functional residue or fragment prediction benchmark. (ICLR 2026)
☆25Apr 10, 2026Updated 6 months ago
Alternatives and similar repositories for VenusX
Users that are interested in VenusX are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Source code of ProDMM. The paper is titled with "Unveiling Protein-DNA Interdependency: Harnessing Unified Multimodal Sequence Modeling, …☆10Oct 12, 2026Updated 3 weeks ago
- Source code of PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications.☆33May 16, 2025Updated last year
- VenusFold☆16Sep 14, 2026Updated last month
- Versatile Embedding Network for Understanding protein Sequences☆26May 16, 2025Updated last year
- ☆20May 16, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆98Sep 29, 2026Updated last month
- 🏭 AI agent platform with skills for protein engineering, the noob-friendly AI tutorial tool for life science professionals. (ACL Demo202…☆254Updated this week
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆27May 16, 2025Updated last year
- ☆11Oct 7, 2025Updated last year
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- ☆10Apr 12, 2023Updated 3 years ago
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆19May 15, 2026Updated 5 months ago
- Paste a protein sequence, get an a3m. Borrows AlphaFold DB's precomputed MSAs instead of running a search.☆11Aug 8, 2026Updated 3 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆148Sep 29, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Joint Protein-Ligand Embedding☆11Oct 3, 2025Updated last year
- ☆43Jun 17, 2025Updated last year
- Fast and Interpretable Protein Substructure Alignment via Optimal Transport (ICLR 2026)☆27Jun 26, 2026Updated 4 months ago
- Protein Language Modeling beyond static folds reveals sequence-encoded flexibility☆37Feb 1, 2026Updated 9 months ago
- ☆45Aug 1, 2025Updated last year
- ☆17Dec 10, 2024Updated last year
- A structure- and epistasis-aware model for predicting higher-order protein mutant fitness.☆21Oct 13, 2026Updated 3 weeks ago
- ☆15Jun 24, 2025Updated last year
- Implementation of methods to sample from Boltzmann distributions☆22Jan 24, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆15Sep 4, 2026Updated 2 months ago
- ☆31Aug 12, 2024Updated 2 years ago
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆166Sep 29, 2026Updated last month
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆40Jul 25, 2024Updated 2 years ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Jul 9, 2023Updated 3 years ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆129Apr 23, 2026Updated 6 months ago
- "Rewriting protein alphabets with language models"☆27Oct 24, 2026Updated 2 weeks ago
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆18May 4, 2026Updated 6 months ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fast and accurate protein domain segmentation using Invariant Point Attention☆49May 22, 2025Updated last year
- Environment for developing substructure-aware protein models☆16Mar 26, 2026Updated 7 months ago
- ☆16Mar 5, 2026Updated 8 months ago
- ☆42Aug 20, 2026Updated 2 months ago
- Protein binding site prediction with transformers☆18Jul 7, 2026Updated 4 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 3 years ago
- Structure-based antibody renumbering☆17Updated this week