ai4protein / VenusXView external linksLinks
☆16Sep 24, 2025Updated 4 months ago
Alternatives and similar repositories for VenusX
Users that are interested in VenusX are comparing it to the libraries listed below
Sorting:
- ☆35Jun 17, 2025Updated 7 months ago
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆19Dec 23, 2025Updated last month
- Implementation of methods to sample from Boltzmann distributions☆20Jan 24, 2023Updated 3 years ago
- ☆14May 16, 2025Updated 8 months ago
- ☆17Aug 20, 2024Updated last year
- Versatile Embedding Network for Understanding protein Sequences☆25May 16, 2025Updated 8 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆16Jul 25, 2023Updated 2 years ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Jul 9, 2023Updated 2 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- Source code of PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications.☆33May 16, 2025Updated 8 months ago
- Toolkit for structure-based deep learning on RNA.☆44Updated this week
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆85Jun 23, 2024Updated last year
- A conditionally adapted protein language model for the generation of enzymes☆23Nov 26, 2024Updated last year
- 🏭 Easy data acquisition, benchmark resources, PLM fine-tuning for bio-researchers. (ACL Demo 2025)☆172Updated this week
- [NeurIPS 2024] The implementation for the paper "Geometric Trajectory Diffusion Models".☆34Jul 22, 2025Updated 6 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆46May 22, 2025Updated 8 months ago
- Predicting mutational effects on protein binding from folding energy. ICML 2025.☆40Aug 4, 2025Updated 6 months ago
- A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files☆12Apr 29, 2024Updated last year
- protein structure generation with sparse all-atom denoising models☆59Dec 11, 2025Updated 2 months ago
- ☆16Apr 14, 2025Updated 10 months ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- Deep generative modeling of protein structural ensembles☆36Sep 22, 2025Updated 4 months ago
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆25May 16, 2025Updated 8 months ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- Protein representation and design under a single training scheme☆24Dec 17, 2025Updated last month
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆123Jan 16, 2026Updated 3 weeks ago
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- Generative diverse protein backbones by protein language model☆34Oct 30, 2025Updated 3 months ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆82May 16, 2025Updated 8 months ago
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆44Aug 2, 2025Updated 6 months ago
- Cython implementation of PDB -> DataFrame parsing☆34Dec 23, 2025Updated last month
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆81Mar 7, 2024Updated last year
- [ICML 2024] Floating Anchor Diffusion Model for Multi-motif Scaffolding☆31Aug 23, 2024Updated last year
- code and source data for de novo design of Kemp elimination paper☆24Sep 18, 2025Updated 4 months ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 3 months ago
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆16Jul 30, 2023Updated 2 years ago
- ☆33Aug 12, 2024Updated last year
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆37Apr 2, 2025Updated 10 months ago