Alternatives and similar repositories for IPSAE

Users that are interested in IPSAE are comparing it to the libraries listed below

• Kortemme-Lab / flex_ddG_tutorial
  ☆130Updated 3 years ago
• yehlincho / BoltzDesign1
  ☆219Updated 3 months ago
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆69Updated last month
• ikalvet / heme_binder_diffusion
  ☆140Updated 3 months ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆204Updated 3 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆126Updated 4 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆59Updated 9 months ago
• snufoodbiochem / Alphafold3_tools
  ☆24Updated 9 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆67Updated 4 months ago
• Kuhlman-Lab / evopro
  ☆90Updated last month
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆165Updated last month
• ELELAB / RosettaDDGPrediction
  ☆81Updated 9 months ago
• RosettaCommons / modelforge
  Central repository for biomolecular foundation models with shared trainers and pipeline components
  ☆188Updated last month
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 3 years ago
• bytedance / Protenix-Dock
  An accurate and trainable end-to-end protein-ligand docking framework
  ☆113Updated 7 months ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆155Updated this week
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆77Updated 4 months ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆97Updated 2 years ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆148Updated 2 years ago
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆96Updated 5 months ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆84Updated 5 months ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆123Updated 2 weeks ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆90Updated 2 months ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆148Updated 6 months ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆84Updated 3 months ago
• bunzela / AIzymes
  ☆60Updated 3 weeks ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆77Updated 3 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆105Updated 2 weeks ago
• zhanghaicang / carbonmatrix_public
  ☆116Updated 5 months ago