lehner-lab / MoCHILinks
Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational scanning data
☆55Updated 7 months ago
Alternatives and similar repositories for MoCHI
Users that are interested in MoCHI are comparing it to the libraries listed below
Sorting:
- ☆54Updated 3 months ago
- ☆47Updated 10 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆107Updated 4 months ago
- Learning the language of protein-protein interactions☆103Updated 2 months ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…☆62Updated last month
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆21Updated 2 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆74Updated last month
- ☆41Updated 3 months ago
- An antibody-specific language model focusing on NGL prediction☆31Updated last year
- ☆31Updated last year
- ☆25Updated 2 years ago
- Efficient implementatin of ESM family.☆77Updated 2 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆42Updated 6 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆58Updated last month
- Template-based protein design with Raygun☆76Updated last week
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆66Updated last year
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆34Updated last year
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆110Updated last week
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆58Updated 3 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- ☆73Updated 4 years ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆86Updated last year
- Kuhlman Lab Installation of AlphaFold3☆37Updated 2 months ago
- PLM based active learning model for protein engineering☆84Updated last year
- ☆71Updated 8 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆102Updated this week
- Ultra-fast in-silico structure mutation☆35Updated 8 months ago
- Protein folding in Pymol☆127Updated 2 weeks ago