Alternatives and similar repositories for MoCHI

Users that are interested in MoCHI are comparing it to the libraries listed below

• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆56Updated 5 months ago
• AbSciBio / igdesign
  ☆47Updated last year
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆117Updated 6 months ago
• rohitsinghlab / raygun
  Template-based protein design with Raygun
  ☆76Updated last week
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆131Updated last month
• lehner-lab / doubledeepms
  Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…
  ☆22Updated 2 years ago
• StatPhysBio / protein_holography
  Code for holographic machine learning of proteins
  ☆24Updated last year
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…
  ☆63Updated 3 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆62Updated 5 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆46Updated 8 months ago
• hefeda / PGP
  ☆41Updated 5 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆78Updated 3 months ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆72Updated last year
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆72Updated last year
• Rocklin-Lab / cdna-display-proteolysis-pipeline
  ☆25Updated 2 years ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆80Updated 5 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆127Updated 2 months ago
• yoakiyama / MSA_Pairformer
  ☆128Updated this week
• SNU-CSSB / RF2-Lite
  ☆33Updated last year
• KULL-Centre / _2024_cagiada_stability
  ☆74Updated 10 months ago
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆85Updated last year
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆36Updated 10 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆93Updated last year
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆76Updated 4 years ago
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆113Updated last week
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆110Updated 2 weeks ago
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆60Updated last week
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆87Updated 8 months ago