Alternatives and similar repositories for flash_ipa

Users that are interested in flash_ipa are comparing it to the libraries listed below

• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆40Updated last year
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆83Updated last year
• KatarinaYuan / StructTokenBench
  A benchmark for comprehensive evaluation on protein structure tokenization methods
  ☆37Updated 4 months ago
• alexechu / protpardelle
  ☆65Updated 2 years ago
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆53Updated 2 weeks ago
• petergroth / FLOP
  This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.
  ☆22Updated 2 years ago
• HannesStark / CodonMPNN
  ☆29Updated last year
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆81Updated last year
• 3BioCompBio / AbAgym
  ☆16Updated last month
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆58Updated last year
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆69Updated last year
• luwei0917 / BindingGYM
  ☆36Updated 5 months ago
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆35Updated last year
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆114Updated 2 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆35Updated last year
• ai4protein / VenusX
  ☆15Updated 3 months ago
• A4Bio / FoldToken_open
  ☆23Updated last year
• ProteinDesignLab / protein_shapes
  Metrics to evaluate distributional coverage of generative models of protein structures.
  ☆18Updated 4 months ago
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆61Updated last year
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆67Updated 4 months ago
• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆72Updated last week
• bytedance / apm
  ☆55Updated 7 months ago
• Profluent-Internships / ProCALM
  A conditionally adapted protein language model for the generation of enzymes
  ☆23Updated last year
• ai4protein / VenusMine
  ☆33Updated 6 months ago
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆64Updated 7 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆57Updated 7 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆47Updated last year
• BioinfoMachineLearning / ATOMRefine
  3D equivariant graph transformer for all-atom refinement of protein tertiary structures
  ☆27Updated 2 years ago
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆54Updated 6 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆39Updated last year