Structure prediction and design of proteins with noncanonical amino acids
☆130Feb 1, 2026Updated 3 months ago
Alternatives and similar repositories for RareFold
Users that are interested in RareFold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official repository for DiffPepBuilder and DiffPepDock tools☆125Oct 24, 2025Updated 6 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆138Nov 11, 2025Updated 5 months ago
- In silico directed evolution of peptide binders with AlphaFold☆266Apr 24, 2026Updated last week
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆51Mar 25, 2026Updated last month
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆39Nov 25, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Toolkit for alphafold3 input and output files☆101Apr 16, 2026Updated 2 weeks ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆88Dec 3, 2025Updated 4 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 2 weeks ago
- ☆47Sep 16, 2024Updated last year
- ☆49Nov 19, 2025Updated 5 months ago
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆54Apr 24, 2026Updated last week
- P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching☆43May 22, 2025Updated 11 months ago
- An open-source platform for developing protein models beyond AlphaFold.☆12Jul 15, 2025Updated 9 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆74Jul 2, 2025Updated 9 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- moldrug (AKA mouse) is a Python package for drug-oriented optimization on the chemical space ☆39Mar 30, 2026Updated last month
- Official repository for the paper "Peptide design through binding interface mimicry with PepMimic" accepted by Nature Biomedical Engineer…☆32Oct 20, 2025Updated 6 months ago
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- ☆69Apr 8, 2025Updated last year
- ☆76Jan 23, 2026Updated 3 months ago
- A cyclic peptide-protein complex dataset derived from AFDB.☆42Mar 17, 2026Updated last month
- ☆92Sep 25, 2024Updated last year
- Public version for DistPepFold☆10Jul 17, 2025Updated 9 months ago
- ☆18Mar 13, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆137Jun 3, 2025Updated 10 months ago
- Protein-ligand structure prediction☆240Jul 31, 2025Updated 9 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆80Jan 27, 2026Updated 3 months ago
- ☆13Dec 5, 2024Updated last year
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆80Mar 7, 2026Updated last month
- scripts to find PBD structures for cancer driver proteins☆31Feb 27, 2026Updated 2 months ago
- ☆11Mar 28, 2024Updated 2 years ago
- ESMDynamic repo☆22Updated this week
- A toolkit developed to predict and analyze PROTAC-mediated ternary complexes using AlphaFold3 and Boltz-1.☆41Jul 17, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- mdml: Deep Learning for Molecular Simulations☆54May 17, 2025Updated 11 months ago
- ☆28Feb 27, 2026Updated 2 months ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆191Jun 24, 2024Updated last year
- Python code to run Thermal Titration Molecular Dynamics (TTMD) simulations☆20Feb 25, 2026Updated 2 months ago
- ☆802May 27, 2025Updated 11 months ago
- ☆97Oct 14, 2025Updated 6 months ago
- Public RFDiffusionAA repo☆480Jul 9, 2024Updated last year