Structure prediction and design of proteins with noncanonical amino acids
☆129Feb 1, 2026Updated 2 months ago
Alternatives and similar repositories for RareFold
Users that are interested in RareFold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official repository for DiffPepBuilder and DiffPepDock tools☆124Oct 24, 2025Updated 5 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆138Nov 11, 2025Updated 4 months ago
- In silico directed evolution of peptide binders with AlphaFold☆265Jan 5, 2026Updated 3 months ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆50Mar 25, 2026Updated 2 weeks ago
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆39Nov 25, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆85Dec 3, 2025Updated 4 months ago
- Toolkit for alphafold3 input and output files☆100Mar 30, 2026Updated last week
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Aug 26, 2024Updated last year
- ☆47Sep 16, 2024Updated last year
- ☆49Nov 19, 2025Updated 4 months ago
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆52Mar 31, 2026Updated last week
- P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching☆43May 22, 2025Updated 10 months ago
- An open-source platform for developing protein models beyond AlphaFold.☆12Jul 15, 2025Updated 8 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆73Jul 2, 2025Updated 9 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- moldrug (AKA mouse) is a Python package for drug-oriented optimization on the chemical space ☆39Mar 30, 2026Updated last week
- Official repository for the paper "Peptide design through binding interface mimicry with PepMimic" accepted by Nature Biomedical Engineer…☆30Oct 20, 2025Updated 5 months ago
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated 11 months ago
- ☆68Apr 8, 2025Updated last year
- ☆73Jan 23, 2026Updated 2 months ago
- A cyclic peptide-protein complex dataset derived from AFDB.☆41Mar 17, 2026Updated 3 weeks ago
- ☆92Sep 25, 2024Updated last year
- Public version for DistPepFold☆10Jul 17, 2025Updated 8 months ago
- ☆18Mar 13, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆137Jun 3, 2025Updated 10 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆77Mar 7, 2026Updated last month
- Protein-ligand structure prediction☆240Jul 31, 2025Updated 8 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆78Jan 27, 2026Updated 2 months ago
- ☆13Dec 5, 2024Updated last year
- scripts to find PBD structures for cancer driver proteins☆31Feb 27, 2026Updated last month
- ☆11Mar 28, 2024Updated 2 years ago
- ESMDynamic repo☆22Feb 25, 2026Updated last month
- A toolkit developed to predict and analyze PROTAC-mediated ternary complexes using AlphaFold3 and Boltz-1.☆41Jul 17, 2025Updated 8 months ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- mdml: Deep Learning for Molecular Simulations☆54May 17, 2025Updated 10 months ago
- ☆28Feb 27, 2026Updated last month
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆190Jun 24, 2024Updated last year
- Python code to run Thermal Titration Molecular Dynamics (TTMD) simulations☆20Feb 25, 2026Updated last month
- ☆96Oct 14, 2025Updated 5 months ago
- MAGPIE☆16May 5, 2024Updated last year
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year