patrickbryant1 / RareFoldLinks
Structure prediction and design of proteins with noncanonical amino acids
☆115Updated last month
Alternatives and similar repositories for RareFold
Users that are interested in RareFold are comparing it to the libraries listed below
Sorting:
- mdml: Deep Learning for Molecular Simulations☆48Updated 7 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆60Updated last month
- ☆70Updated last year
- Modelling protein conformational landscape with Alphafold☆54Updated 4 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆60Updated 7 months ago
- ☆54Updated last month
- A benchmark for 3D biomolecular structure prediction models☆67Updated 8 months ago
- Scores for Hydrophobicity and Charges based on SASAs☆40Updated 7 months ago
- ☆37Updated 2 years ago
- ☆47Updated last month
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆42Updated last year
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆36Updated last week
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆80Updated 5 months ago
- ☆42Updated last year
- Fast and accurate molecular docking with an AI pose scoring function☆42Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆41Updated 9 months ago
- Python package for the analysis of natural and modified peptides using a set of modules to study their sequences☆45Updated last month
- A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.☆33Updated 3 years ago
- Extension of ThermoMPNN for double mutant predictions☆51Updated 3 months ago
- Structure prediction of alternative protein conformations☆80Updated 10 months ago
- Code for running BinderFlow☆55Updated last month
- A pipeline that used ML model based on Rosetta descriptors to predict the binding affinity of protein-protein complexes☆48Updated 2 months ago
- ☆43Updated 9 months ago
- ☆34Updated 2 years ago
- Source code and examples for AlphaFold Unmasked☆76Updated last month
- ☆64Updated 2 months ago
- protein structure generation with sparse all-atom denoising models☆54Updated last month
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing Model☆26Updated 3 weeks ago
- Package for storage and analysis of virtual screenings run with AutoDock-GPU and AutoDock Vina☆57Updated this week
- Benchmarking code accompanying the release of `bioemu`☆52Updated last month