Alternatives and similar repositories for RareFold

Users that are interested in RareFold are comparing it to the libraries listed below

• svats73 / mdml
  mdml: Deep Learning for Molecular Simulations
  ☆50Updated 8 months ago
• tiwarylab / af2rave
  Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2
  ☆60Updated last week
• tiwarylab / alphafold2rave
  ☆70Updated last year
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆54Updated 5 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆61Updated 8 months ago
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆41Updated 7 months ago
• matteoferla / rdkit_to_params
  Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file
  ☆36Updated last month
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆69Updated 8 months ago
• bunzela / AIzymes
  ☆66Updated 3 months ago
• molecularmodelinglab / plantain
  Fast and accurate molecular docking with an AI pose scoring function
  ☆42Updated 2 years ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆43Updated last year
• sokrypton / af2bind
  ☆54Updated 2 months ago
• forlilab / Ringtail
  Package for storage and analysis of virtual screenings run with AutoDock-GPU and AutoDock Vina
  ☆58Updated this week
• novonordisk-research / pepfunn
  Python package for the analysis of natural and modified peptides using a set of modules to study their sequences
  ☆47Updated 2 months ago
• pstansfeld / MemProtMD
  ☆47Updated last week
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆80Updated 11 months ago
• ohuelab / ColabDesign-cyclic-binder
  ☆37Updated 2 years ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆53Updated last week
• huhlim / alphafold-multistate
  ☆42Updated last year
• LDeng0205 / StaB-ddG
  Predicting mutational effects on protein binding from folding energy. ICML 2025.
  ☆40Updated 6 months ago
• schwallergroup / DynaMate
  ☆55Updated last week
• chavesejf / PBEE
  A pipeline that used ML model based on Rosetta descriptors to predict the binding affinity of protein-protein complexes
  ☆49Updated 3 months ago
• iriziotis / Uniprot-PDB-mapper
  Quick mapping of Uniprot sequences to PDB structures
  ☆36Updated 10 months ago
• xuhuihuang / featuredock
  FeatureDock is a protein-ligand docking software guided by physicochemical feature-based local environment learning using Transformer
  ☆39Updated last year
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆87Updated 4 months ago
• plinder-org / runs-n-poses
  A benchmark dataset for protein-ligand co-folding prediction
  ☆45Updated 5 months ago
• mirabdi / PDAnalysis
  ☆33Updated 2 years ago
• pablo-arantes / ermsfkit
  ☆46Updated 2 months ago
• pritampanda15 / PandaMap
  Ligand-Protein Interaction Mapping
  ☆75Updated 9 months ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆108Updated last week