Structure prediction and design of proteins with noncanonical amino acids
☆119Feb 1, 2026Updated last month
Alternatives and similar repositories for RareFold
Users that are interested in RareFold are comparing it to the libraries listed below
Sorting:
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆50Dec 2, 2025Updated 2 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆118Oct 24, 2025Updated 4 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆135Nov 11, 2025Updated 3 months ago
- Toolkit for alphafold3 input and output files☆97Updated this week
- In silico directed evolution of peptide binders with AlphaFold☆262Jan 5, 2026Updated last month
- Public version for DistPepFold☆10Jul 17, 2025Updated 7 months ago
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆39Nov 25, 2024Updated last year
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆82Dec 3, 2025Updated 2 months ago
- ☆46Nov 19, 2025Updated 3 months ago
- ☆47Sep 16, 2024Updated last year
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆49Feb 20, 2026Updated last week
- An open-source platform for developing protein models beyond AlphaFold.☆12Jul 15, 2025Updated 7 months ago
- mdml: Deep Learning for Molecular Simulations☆52May 17, 2025Updated 9 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆73Jul 2, 2025Updated 7 months ago
- ☆91Sep 25, 2024Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Aug 26, 2024Updated last year
- scripts to find PBD structures for cancer driver proteins☆31Updated this week
- ☆65Apr 8, 2025Updated 10 months ago
- Protein-ligand structure prediction☆238Jul 31, 2025Updated 7 months ago
- MAGPIE☆16May 5, 2024Updated last year
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆11Jan 25, 2026Updated last month
- A standardized protein design benchmark for motif-scaffolding problems☆75Jan 27, 2026Updated last month
- ☆17Feb 5, 2026Updated 3 weeks ago
- ☆18Mar 13, 2024Updated last year
- Python rich client for visual protein Sequence to Structure Analysis☆18Updated this week
- ☆134Jun 3, 2025Updated 8 months ago
- P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching☆44May 22, 2025Updated 9 months ago
- moldrug (AKA mouse) is a Python package for drug-oriented optimization on the chemical space ☆39Nov 5, 2025Updated 3 months ago
- ☆95Oct 14, 2025Updated 4 months ago
- ☆74Feb 13, 2026Updated 2 weeks ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNN☆27Feb 18, 2026Updated last week
- ☆56Feb 16, 2026Updated last week
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆226Aug 7, 2025Updated 6 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆61Jan 30, 2026Updated last month
- Rendering protein mutation movies from predicted 3D structures☆20Dec 7, 2023Updated 2 years ago
- Official Implementation of CompassDock☆21Feb 13, 2026Updated 2 weeks ago
- Python code to run Thermal Titration Molecular Dynamics (TTMD) simulations☆20Updated this week
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆156Oct 11, 2023Updated 2 years ago