lujiarui / esmdiff
Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)
☆44Updated last month
Alternatives and similar repositories for esmdiff:
Users that are interested in esmdiff are comparing it to the libraries listed below
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆40Updated 4 months ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆64Updated 5 months ago
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆37Updated 9 months ago
- protein structure generation with sparse all-atom denoising models☆28Updated last month
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆34Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆33Updated 9 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆47Updated 2 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆57Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆68Updated 5 months ago
- ☆79Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆73Updated 9 months ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆46Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆53Updated last week
- A benchmark for 3D biomolecular structure prediction models☆56Updated 3 months ago
- Benchmarking code accompanying the release of `bioemu`☆18Updated last month
- Official repository of ReactZyme☆27Updated 5 months ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆30Updated 3 weeks ago
- ☆32Updated 2 years ago
- ☆48Updated 2 months ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆58Updated 2 weeks ago
- A standardized protein design benchmark for motif-scaffolding problems☆43Updated last week
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆43Updated 3 months ago
- ☆38Updated last year
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆57Updated 9 months ago
- ☆21Updated 5 months ago
- ☆66Updated last month
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆32Updated 4 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆83Updated last month