lujiarui / esmdiffLinks
Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)
☆61Updated 6 months ago
Alternatives and similar repositories for esmdiff
Users that are interested in esmdiff are comparing it to the libraries listed below
Sorting:
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 3 months ago
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆63Updated 11 months ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆90Updated 3 months ago
- ☆76Updated 6 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆67Updated last month
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆44Updated 9 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆80Updated last year
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆77Updated last year
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆56Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- ☆15Updated 5 months ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆90Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆118Updated 6 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆70Updated 2 weeks ago
- Code for humanization of antibody and nanobody☆49Updated 9 months ago
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆40Updated last year
- Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"☆86Updated last year
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Updated 2 years ago
- Official repository of ReactZyme☆36Updated 10 months ago
- Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch☆36Updated last month
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆96Updated 2 years ago
- ☆35Updated 10 months ago
- A benchmark for 3D biomolecular structure prediction models☆64Updated 3 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆46Updated 7 months ago
- Implementation of NeurIPS24 paper "Generalized Protein Pocket Generation with Prior-Informed Flow Matching"☆16Updated 3 months ago