microsoft / protnoteLinks
ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function prediction
☆58Updated 8 months ago
Alternatives and similar repositories for protnote
Users that are interested in protnote are comparing it to the libraries listed below
Sorting:
- ☆77Updated last year
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆77Updated 4 months ago
- Genomic language model predicts protein co-regulation and function☆85Updated 9 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆121Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆102Updated 11 months ago
- Transmembrane proteins predicted through Language Model embeddings☆44Updated 5 months ago
- A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…☆41Updated 5 months ago
- Detection of remote homology by comparison of protein language model representations☆61Updated last year
- DeepECtransformer☆29Updated 2 years ago
- A pipeline to build similarity maps of protein space☆40Updated 3 months ago
- ☆30Updated 2 years ago
- Modeling whole bacterial genome as a sequence of proteins.☆84Updated 2 months ago
- Feature map and function annotation of Proteins☆34Updated last year
- Fast protein domain structure embedding+search tool☆27Updated 3 months ago
- Python framework for doing ancestral sequence reconstruction☆42Updated last year
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆63Updated 5 years ago
- ☆51Updated last year
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆33Updated 3 weeks ago
- Evolutionary velocity with protein language models☆95Updated last month
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆77Updated 4 months ago
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- ☆85Updated 2 years ago
- ColabFold protocol☆56Updated last year
- A tool for protein and protein complex structure prediction.☆29Updated 7 months ago
- Fast protein structure searching or your money back☆118Updated this week
- MMseqs2 app to run on your workstation or servers☆102Updated 3 weeks ago
- A domain parser for Alphafold models☆46Updated 2 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆33Updated 2 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Updated 4 months ago