Alternatives and similar repositories for protnote

Users that are interested in protnote are comparing it to the libraries listed below

• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆121Updated last year
• TattaBio / gLM2
  ☆75Updated last year
• macwiatrak / Bacformer
  Modeling whole bacterial genome as a sequence of proteins.
  ☆83Updated 2 months ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆85Updated 9 months ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆76Updated 3 months ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆27Updated 3 months ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆42Updated last year
• MicroResearchLab / AMP-potency-prediction-EvoGradient
  A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…
  ☆41Updated 4 months ago
• Arcadia-Science / ProteinCartography
  A pipeline to build similarity maps of protein space
  ☆40Updated 2 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆102Updated 10 months ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆56Updated 3 years ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆43Updated 4 months ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆29Updated 2 years ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆62Updated 5 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆59Updated last year
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆33Updated last week
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated 2 weeks ago
• clairemcwhite / vcmsa
  ☆30Updated 2 years ago
• chayan7 / flashfold
  A tool for protein and protein complex structure prediction.
  ☆29Updated 6 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆93Updated 2 months ago
• TattaBio / OMG
  ☆50Updated last year
• sacdallago / biotrainer
  Biological prediction models made simple.
  ☆47Updated last month
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆40Updated last week
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆57Updated last year
• greener-group / progres
  Fast protein structure searching or your money back
  ☆118Updated 2 months ago
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆77Updated 4 months ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆34Updated last year
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆203Updated 2 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆46Updated 2 years ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆101Updated last week