microsoft / protnoteLinks
ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function prediction
☆54Updated 4 months ago
Alternatives and similar repositories for protnote
Users that are interested in protnote are comparing it to the libraries listed below
Sorting:
- ☆71Updated 11 months ago
- Detection of remote homology by comparison of protein language model representations☆54Updated 9 months ago
- Fast protein domain structure embedding+search tool☆26Updated 3 months ago
- ☆30Updated last year
- Python framework for doing ancestral sequence reconstruction☆41Updated last year
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆73Updated last week
- Genomic language model predicts protein co-regulation and function☆81Updated 5 months ago
- Transmembrane proteins predicted through Language Model embeddings☆39Updated last month
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆71Updated 3 weeks ago
- ☆44Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆119Updated last year
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Updated last week
- Evolutionary velocity with protein language models☆94Updated last year
- DeepECtransformer☆28Updated last year
- A domain parser for Alphafold models☆40Updated last year
- a pipeline to build similarity maps of protein space☆37Updated 9 months ago
- ☆43Updated 11 months ago
- Feature map and function annotation of Proteins☆33Updated last year
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆58Updated 4 years ago
- A tool for protein and protein complex structure prediction.☆29Updated 3 months ago
- ☆58Updated last month
- A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…☆32Updated last month
- ☆68Updated 11 months ago
- Biological prediction models made simple.☆44Updated 3 weeks ago
- Fast protein structure searching or your money back☆112Updated 5 months ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated 2 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆37Updated 2 weeks ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆15Updated 8 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆186Updated this week
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆40Updated 2 months ago