KULL-Centre / _2022_ML-ddG-Blaabjerg

Related projects: ⓘ

• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆44Updated 5 months ago
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆22Updated 3 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆71Updated 5 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆29Updated 9 months ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆30Updated 6 years ago
• Fleishman-Lab / CUMAb
  ☆18Updated 3 months ago
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆24Updated 8 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆46Updated last month
• robpearc / DeepFoldRNA
  ☆28Updated 9 months ago
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆103Updated last month
• elaspic / elaspic2
  Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…
  ☆18Updated 3 years ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆34Updated 3 months ago
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆22Updated 11 months ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆28Updated 2 years ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆80Updated this week
• jcheongs / alphafold-multimer
  ☆21Updated 2 years ago
• varun-shanker / structural-evolution
  ☆63Updated 2 months ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆83Updated 2 weeks ago
• bene837 / af2seq
  ☆31Updated this week
• beckham-lab / EpHod
  Deep learning prediction of enzyme optimum pH
  ☆22Updated 9 months ago
• jongseo-park / binder-design
  ☆16Updated this week
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆61Updated last month
• oxpig / SPACE2
  Tool for rapid clustering of antibody models by the structure of their CDRs.
  ☆18Updated 3 months ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆49Updated last month
• rochoa85 / PepFun2
  PepFun 2.0: improved protocols for the analysis of natural and modified peptides
  ☆19Updated last year
• AlexanderKroll / KM_prediction
  ☆30Updated 2 years ago
• Protein-Engineering-Framework / PyPEF
  PyPEF – Pythonic Protein Engineering Framework
  ☆20Updated last month
• Wang-Lin-boop / GetPDB
  Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…
  ☆35Updated last month
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆17Updated 8 months ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆40Updated last month