MrTomRod / assembly-curatorLinks
Quickly generate consensus assemblies for bacterial genomes
☆14Updated last month
Alternatives and similar repositories for assembly-curator
Users that are interested in assembly-curator are comparing it to the libraries listed below
Sorting:
- Plasmid analysis using rearrangement distances☆46Updated last month
- a simple tool for listing conda environments with descriptions☆14Updated 7 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 2 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- Calculate assocations between genes and traits☆28Updated 7 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆63Updated 4 months ago
- ☆23Updated this week
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- Genome size estimation from long read overlaps☆62Updated last month
- Microbial agile accurate SNP Typer☆29Updated last year
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆24Updated 3 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- A new high-resolution long-read metagenome assembler for even noisy reads☆100Updated last month
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Recombination-free trees☆60Updated last month
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 3 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆39Updated last month
- viralFlye pipeline☆18Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Colinear block visualisation tool☆31Updated last year
- ☆24Updated 8 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- ☆10Updated 4 months ago