xuehansheng / RepBinView external linksLinks
[AAAI'22] RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning
☆25Jan 26, 2024Updated 2 years ago
Alternatives and similar repositories for RepBin
Users that are interested in RepBin are comparing it to the libraries listed below
Sorting:
- ☆14Jan 28, 2026Updated 2 weeks ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- [Briefings in Bioinformatics'20] Integrating multi-network topology for gene function prediction using deep neural networks☆14Sep 5, 2019Updated 6 years ago
- complex Chaos Game Representation for DNA sequences☆21Apr 3, 2025Updated 10 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- 🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit☆22May 29, 2025Updated 8 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆68Sep 26, 2024Updated last year
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated last year
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 3 months ago
- ✨🧬 Refined binning of metagenomic contigs using assembly graphs☆97Mar 6, 2025Updated 11 months ago
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 2 months ago
- Tools for analysis of sequence divergence☆15Updated this week
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆10Oct 3, 2025Updated 4 months ago
- Metagenomic Binning Algorithm☆51Jan 16, 2026Updated 3 weeks ago
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated 10 months ago
- Just another minhash implementation.☆12Updated this week
- Development repo for pyani-plus (the next iteration of pyani)☆24Jan 26, 2026Updated 2 weeks ago
- Training scripts for BERTax☆12Jun 12, 2024Updated last year
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 6 months ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year
- LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.☆32May 30, 2023Updated 2 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- Needleman-Wunsch Alignment in Go☆12Nov 9, 2020Updated 5 years ago
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Apr 10, 2025Updated 10 months ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆21Dec 9, 2025Updated 2 months ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Rust crate to deal with phylogenetic trees☆14Dec 3, 2025Updated 2 months ago
- Quickly get coverage statistics given reads and an assembly☆16May 13, 2024Updated last year
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- Ultra-rapid detection of viral variants directly from sequencing data☆34Feb 6, 2026Updated last week
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 2 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆19Jan 22, 2026Updated 3 weeks ago
- Basecalling configuration prediction through FASTQ files☆32Nov 24, 2025Updated 2 months ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 2 years ago
- ☆16May 22, 2023Updated 2 years ago
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 4 years ago