[AAAI'22] RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning
☆25Jan 26, 2024Updated 2 years ago
Alternatives and similar repositories for RepBin
Users that are interested in RepBin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [Briefings in Bioinformatics'20] Integrating multi-network topology for gene function prediction using deep neural networks☆14Sep 5, 2019Updated 6 years ago
- [WWW'21] Multiplex Bipartite Network Embedding using Dual Hypergraph Convolutional Networks☆46Oct 11, 2021Updated 4 years ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 6 months ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- Training scripts for BERTax☆12Jun 12, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit☆24Apr 23, 2026Updated 2 weeks ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- ☆15Jan 28, 2026Updated 3 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆17Updated this week
- Metagenomic Binning Algorithm☆51Jan 16, 2026Updated 3 months ago
- Quickly get coverage statistics given reads and an assembly☆16May 13, 2024Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- complex Chaos Game Representation for DNA sequences☆21Apr 3, 2025Updated last year
- ✨🧬 Refined binning of metagenomic contigs using assembly graphs☆97Mar 6, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Tools for analysis of sequence divergence☆15Apr 28, 2026Updated last week
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆10Oct 3, 2025Updated 7 months ago
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated last year
- ☆10Dec 29, 2021Updated 4 years ago
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- Phyling: phylogenetic inference from annotated genomes☆32Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆36Nov 20, 2023Updated 2 years ago
- Manipulate and generate figures for trees in Newick format☆22Jul 31, 2025Updated 9 months ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆24Feb 22, 2026Updated 2 months ago
- Variant to disease dataset workflows for Open Targets Genetics☆13Aug 23, 2022Updated 3 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆66Apr 10, 2025Updated last year
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 3 months ago
- ☆16Nov 17, 2023Updated 2 years ago
- A toolkit for analyzing and visualizing phylogenetic placement data☆65Apr 28, 2026Updated last week
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.☆32Apr 25, 2026Updated 2 weeks ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆161Apr 25, 2026Updated 2 weeks ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 8 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆213Updated this week