xuehansheng / RepBinLinks
[AAAI'22] RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning
☆22Updated last year
Alternatives and similar repositories for RepBin
Users that are interested in RepBin are comparing it to the libraries listed below
Sorting:
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆65Updated 11 months ago
- GCN classifier for phage taxanomy classification☆32Updated 9 months ago
- Tool for unsupervised contig binning from viral metagenomes☆17Updated 3 years ago
- ☆12Updated 3 months ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆10Updated 2 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆20Updated 3 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 4 years ago
- ☆19Updated 4 years ago
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Updated 9 months ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Updated 5 months ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14Updated 2 years ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Updated 9 months ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Updated 3 years ago
- A genome binning method for contig binning, based on semi-supervised spectral clustering method.☆13Updated 4 years ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Updated last month
- Genomic sequence aligner☆26Updated last month
- GTDB => NCBI☆14Updated 9 months ago
- ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes☆16Updated last year
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated this week
- The binning tool with dynamic contrastive learning and deep language model☆13Updated last week
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆23Updated 7 months ago
- A novel method for sequence similarity estimation☆28Updated last year
- Graph convolutional neural network for host prediction☆19Updated last month
- ☆16Updated 2 weeks ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆19Updated 8 months ago
- metabolic heatmap☆21Updated 6 years ago
- Strain Resolution ON Graphs☆48Updated 2 years ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Updated 11 months ago
- A whole-genome and alignment-free prokaryotic phylogeny tool☆23Updated 5 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆53Updated 4 months ago