[AAAI'22] RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning
β25Jan 26, 2024Updated 2 years ago
Alternatives and similar repositories for RepBin
Users that are interested in RepBin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- π¦π§¬ Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphsβ67Aug 28, 2026Updated 2 months ago
- π𧬠GraphBin-Tk: assembly graph-based metagenomic binning toolkitβ24Jun 25, 2026Updated 4 months ago
- β36Aug 7, 2026Updated 3 months ago
- β―οΈπ§¬ Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphsβ37Oct 24, 2025Updated last year
- Metagenomic Binning Algorithmβ56Updated this week
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code used to analyse and plot metadata of metagenomic binning toolsβ14Aug 22, 2024Updated 2 years ago
- Serverless implementation of Beacon V2 protocol, to enable cheaper and faster exchange of genomic and phenotypic informationβ15Jun 1, 2026Updated 5 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)β22Nov 24, 2024Updated last year
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmaxβ39Aug 28, 2026Updated 2 months ago
- Training scripts for BERTaxβ12Jun 12, 2024Updated 2 years ago
- Trim lots of metagenomics samples all at onceβ10May 2, 2024Updated 2 years ago
- LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.β33Aug 10, 2026Updated 2 months ago
- Jaeger is a quick and precise tool for detecting viruses in sequence assemblies.β11Oct 14, 2026Updated 3 weeks ago
- β¨π§¬ Refined binning of metagenomic contigs using assembly graphsβ97Mar 6, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A software for gap filling in genome assembliesβ10Aug 12, 2022Updated 4 years ago
- β23Sep 19, 2025Updated last year
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomesβ25Sep 27, 2026Updated last month
- SemiBin: metagenomics binning with self-supervised deep learningβ175Oct 13, 2026Updated 3 weeks ago
- Compressed, associative, and exact hash table for k-mersβ11Oct 15, 2026Updated 3 weeks ago
- Ancient Metagenome Assembler For Heavily Damaged Datasetsβ12Oct 27, 2025Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGsβ25Mar 19, 2023Updated 3 years ago
- One pure-Rust binary that finds genes in phages, viruses, giant viruses, crassphages, bacteria, archaea, eukaryotes β and raw sequencing β¦β36Oct 14, 2026Updated 3 weeks ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.β38Apr 23, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!β14May 12, 2024Updated 2 years ago
- Amplicon sequencing variants and taxonomic profiling from modern nanopore / HiFi long read amplicons.β72Updated this week
- core library codeβ11Updated this week
- β86Aug 23, 2026Updated 2 months ago
- An algorithm for clustering metagenomic sequences.β43Aug 5, 2026Updated 3 months ago
- Discovery of conserved gene clusters in multiple genomesβ136Oct 22, 2026Updated 2 weeks ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.β58Sep 28, 2026Updated last month
- Clustering tool optimized for sparse distance matrices: ~16M elements with ~190M connections clustered in minutes.β16Sep 12, 2026Updated last month
- complex Chaos Game Representation for DNA sequencesβ22Apr 3, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This is the repository for the project entitled "Revisiting K-mer Profile for Effective and Scalable Genome Representation Learning"β11Oct 21, 2024Updated 2 years ago
- Metapresence is a Python tool to calculate metrics to assess the evenness of the coverage distribution on DNA sequences, in order to infeβ¦β10Feb 18, 2025Updated last year
- A supertree method for rooted source treesβ12Aug 31, 2026Updated 2 months ago
- The binning tool with dynamic contrastive learning and deep language modelβ28Oct 21, 2026Updated 2 weeks ago
- Host depletion optimised for clinical metagenomic sequencing applicationsβ19Jul 9, 2026Updated 3 months ago
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality euβ¦β26Updated this week
- Ensemble of HMM methods (SEPP, TIPP, UPP)β13Oct 2, 2024Updated 2 years ago