Strain Resolution ON Graphs
☆50Jul 18, 2023Updated 3 years ago
Alternatives and similar repositories for STRONG
Users that are interested in STRONG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Strain-level abundance analysis tool for short-read metagenomics☆12Jul 12, 2026Updated 3 months ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 6 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆239May 9, 2026Updated 5 months ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 6 years ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆25Feb 22, 2026Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Oct 3, 2023Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- ☆32Sep 21, 2023Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Bioinformatics program inStrain☆193Oct 20, 2026Updated last week
- Rapid comparison and dereplication of genomes☆360Oct 9, 2026Updated 3 weeks ago
- ☆12May 6, 2022Updated 4 years ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Graph-based assembly phasing☆102Nov 25, 2025Updated 11 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆67Aug 28, 2026Updated 2 months ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated last year
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- ✨🧬 Refined binning of metagenomic contigs using assembly graphs☆97Mar 6, 2025Updated last year
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆120Jan 29, 2026Updated 9 months ago
- Functions to manipulate and visualize microbial community data☆12Sep 15, 2023Updated 3 years ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated 2 years ago
- mGEMS Genomic epidemiology with mixed samples☆17Sep 4, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data☆13Aug 26, 2026Updated 2 months ago
- ☆47Jun 27, 2023Updated 3 years ago
- Variational autoencoder for metagenomic binning☆335Apr 27, 2026Updated 6 months ago
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated 2 years ago
- CRISPRDetect: A flexible algorithm to define CRISPR arrays☆11Jan 20, 2022Updated 4 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- ☆21Oct 23, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- MetaCarvel: A scaffolder for metagenomes☆14Apr 13, 2026Updated 6 months ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 9 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆43Oct 19, 2026Updated last week
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆251Sep 16, 2026Updated last month
- Pan-genome inference and genotyping with long noisy or short accurate reads☆121Dec 13, 2024Updated last year
- Strain resolver for metagenomics☆81Aug 2, 2024Updated 2 years ago