anuradhawick / kmertoolsLinks
kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
☆32Updated 8 months ago
Alternatives and similar repositories for kmertools
Users that are interested in kmertools are comparing it to the libraries listed below
Sorting:
- sunburst plots for taxonomy - working to update Krona☆40Updated this week
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 9 months ago
- Nail is an Alignment Inference tooL☆51Updated last week
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆29Updated last year
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆18Updated 5 months ago
- LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.☆33Updated 2 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆16Updated 2 months ago
- Remove human reads from a sequencing run☆40Updated 3 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 4 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆41Updated last week
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 3 months ago
- Genome size estimation from long read overlaps☆59Updated last week
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆23Updated last month
- k-mers and the like☆22Updated last week
- Fast and exact gap-affine partial order alignment☆54Updated last month
- fast, multithreaded sourmash operations: search, compare, and gather.☆23Updated last week
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆37Updated last year
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆44Updated 2 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆19Updated 8 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆21Updated 11 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- FASTX search and [host] depletion using minimizers☆80Updated last week
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Updated 9 months ago
- A novel method for sequence similarity estimation☆28Updated last year
- Plasmid analysis using rearrangement distances☆45Updated 2 months ago
- Manipulate and generate figures for trees in Newick format☆22Updated 3 weeks ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 months ago