kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
☆49Jul 12, 2026Updated 2 months ago
Alternatives and similar repositories for kmertools
Users that are interested in kmertools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for analysis of sequence divergence☆15Updated this week
- Python project to validate a phylogenetic fitted models is within the limits of inference☆20Apr 13, 2026Updated 5 months ago
- 🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit☆24Jun 25, 2026Updated 3 months ago
- A new approach to obtaining local copies of ensembl data☆24Sep 11, 2026Updated last week
- Quickly get coverage statistics given reads and an assembly☆17May 13, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆51Updated this week
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Sep 7, 2026Updated 2 weeks ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆34Aug 26, 2024Updated 2 years ago
- Comparative Genomics Toolkit 3☆137Updated this week
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated 2 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 2 months ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Sep 1, 2026Updated 3 weeks ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆26May 8, 2024Updated 2 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆48Sep 9, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆37Updated this week
- LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.☆33Aug 10, 2026Updated last month
- A new high-resolution long-read metagenome assembler for even noisy reads☆171Sep 9, 2026Updated 2 weeks ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆45May 2, 2026Updated 4 months ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆34Feb 17, 2026Updated 7 months ago
- ☆10Jun 9, 2025Updated last year
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Sep 9, 2026Updated 2 weeks ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 4, 2026Updated 2 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Bifrost graph gene caller.☆101Aug 31, 2026Updated 3 weeks ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆38Sep 4, 2026Updated 2 weeks ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆61Sep 23, 2025Updated last year
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- k-mers and the like☆23Aug 30, 2026Updated 3 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆264May 13, 2026Updated 4 months ago
- Tearing through FASTA/Q sequences☆41Jul 9, 2026Updated 2 months ago
- ✨🧬 Refined binning of metagenomic contigs using assembly graphs☆98Mar 6, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A novel method for sequence similarity estimation☆28Mar 23, 2024Updated 2 years ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆227Sep 15, 2026Updated last week
- Split k-mer analysis – version 2☆106Jul 9, 2026Updated 2 months ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Jul 30, 2026Updated last month
- sunburst plots for taxonomy - working to update Krona☆48Sep 22, 2025Updated last year
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 7 months ago
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 2 months ago