kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
☆47Jul 12, 2026Updated last month
Alternatives and similar repositories for kmertools
Users that are interested in kmertools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for analysis of sequence divergence☆15Updated this week
- Python project to validate a phylogenetic fitted models is within the limits of inference☆20Apr 13, 2026Updated 4 months ago
- 🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit☆24Jun 25, 2026Updated last month
- A new approach to obtaining local copies of ensembl data☆24Apr 23, 2026Updated 3 months ago
- Quickly get coverage statistics given reads and an assembly☆17May 13, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆50Updated this week
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆84Updated this week
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆33Aug 26, 2024Updated last year
- Comparative Genomics Toolkit 3☆137Updated this week
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last month
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆26May 8, 2024Updated 2 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆47Aug 20, 2025Updated 11 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆36Updated this week
- LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.☆33Updated this week
- A new high-resolution long-read metagenome assembler for even noisy reads☆163Jul 3, 2026Updated last month
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 3 months ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated 5 months ago
- ☆10Jun 9, 2025Updated last year
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 8 months ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bifrost graph gene caller.☆99Jun 18, 2026Updated last month
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆38Aug 3, 2026Updated last week
- A repo with just adapter sequences☆15Jul 7, 2025Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆61Sep 23, 2025Updated 10 months ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- k-mers and the like☆23Updated this week
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆260May 13, 2026Updated 3 months ago
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated last month
- ✨🧬 Refined binning of metagenomic contigs using assembly graphs☆98Mar 6, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A novel method for sequence similarity estimation☆28Mar 23, 2024Updated 2 years ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆224Updated this week
- Split k-mer analysis – version 2☆105Jul 9, 2026Updated last month
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Jul 30, 2026Updated 2 weeks ago
- sunburst plots for taxonomy - working to update Krona☆46Sep 22, 2025Updated 10 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 6 months ago
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 3 weeks ago