SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.
☆10Apr 16, 2020Updated 6 years ago
Alternatives and similar repositories for sopang
Users that are interested in sopang are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HexDumpColoringBook - binary file analysis helper☆13Jun 21, 2019Updated 7 years ago
- Multiple Bacteria Genome Compressor (MBGC)☆13Aug 29, 2026Updated 2 months ago
- Simple and fast MinHash implementation in C with Python wrapper☆13Jul 24, 2025Updated last year
- MAME☆18Mar 21, 2025Updated last year
- ☆15Aug 6, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Runtime economic governance for AI agents. Circuit Breaker adds risk-managed execution, cost ceilings, and kill switches to autonomous AI…☆30Jun 23, 2026Updated 4 months ago
- ☆30Oct 13, 2026Updated 3 weeks ago
- This is an implementation of the hdbscan algorithm RICARDO J. G. B. CAMPELLO et al.☆18Apr 29, 2025Updated last year
- List of Valuable Resources saved for future use.☆16Nov 18, 2025Updated 11 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Sep 3, 2026Updated 2 months ago
- Collection of single header libraries I've written. C++ dynamic array and hashmap, runtime and compile time hashing functions, and a .ply…☆11Oct 5, 2026Updated 3 weeks ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 3 years ago
- Franka Control Interface (FCI) documentation source☆24Updated this week
- Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees☆13Mar 26, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Portable tools to determine endianness (compile and run time), efficient and optimized swapping byte order, and convert values between ho…☆11Apr 4, 2013Updated 13 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆10Oct 29, 2020Updated 6 years ago
- Just a collection of Data Visualization resources curated by MPJ from Fun Fun Function. Pull requests welcome - for now, just a rather un…☆25Feb 2, 2025Updated last year
- Non-negative Least Square Algorithm☆10Nov 15, 2013Updated 12 years ago
- Fast Linear Regression in C☆11Oct 19, 2019Updated 7 years ago
- Scripts for normalizing coverage in samples with highly amplified regions☆10Jan 19, 2021Updated 5 years ago
- Welcome to Physcraper’s repository! Automatic gene tree updating using the Open Tree of Life.☆13May 13, 2022Updated 4 years ago
- Testing hybridization using species trees☆10Aug 25, 2017Updated 9 years ago
- A tool for typing SCCmec cassettes in assemblies☆14Aug 25, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- Personal Development on Fast Artificial Neural Network Library☆12Nov 26, 2013Updated 12 years ago
- A Rational Defense of Reasonable Reflection (LICS'26 Keynote)☆10Jul 21, 2026Updated 3 months ago
- Lists of pre-defined macros for various C/C++ compilers☆19Nov 15, 2019Updated 6 years ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆11Sep 3, 2025Updated last year
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆13Jun 23, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Do you even science, bro? Using RNN's to predict scientific titles.☆14Jun 5, 2017Updated 9 years ago
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 8 years ago
- Phylogenetic Clustering (Phyloclustering)☆10Sep 6, 2023Updated 3 years ago
- Kinetic Slider for AngularJS☆11Sep 30, 2014Updated 12 years ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Jul 22, 2022Updated 4 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated 2 years ago
- What do you type while vacuuming your keyboard?☆12Mar 31, 2016Updated 10 years ago