Lightweight header-only C++ library for loading and traversing trees
☆24Mar 9, 2025Updated last year
Alternatives and similar repositories for CompactTree
Users that are interested in CompactTree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TreeSwift: Fast tree module for Python 3☆87Nov 19, 2024Updated last year
- ☆15Aug 6, 2020Updated 5 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Nov 28, 2025Updated 4 months ago
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆15Jun 21, 2024Updated last year
- Explore spaces of phylogenetic trees☆29Aug 28, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆17Mar 22, 2026Updated 3 weeks ago
- Functions for phylogenetic analyses☆36Nov 10, 2025Updated 5 months ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- TN93 fast distance calculator☆19Jul 16, 2025Updated 8 months ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆43Mar 26, 2026Updated 2 weeks ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆41Apr 8, 2024Updated 2 years ago
- R package providing utilities for INLA☆31Nov 23, 2022Updated 3 years ago
- Woltka: a versatile meta'omic data classifier☆77Sep 8, 2025Updated 7 months ago
- LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models☆20Mar 30, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Efficient calculation of phylogenetic distance matrices.☆50Oct 8, 2024Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 9 months ago
- Efficient phylogenetic clustering of viral sequences☆95Nov 19, 2025Updated 4 months ago
- a guideRNA database generation tool☆18Mar 3, 2025Updated last year
- distance based phylogenetic placement☆27Feb 28, 2024Updated 2 years ago
- Rcpp Example for accessing NLopt☆14Jan 27, 2026Updated 2 months ago
- FMtree: A fast locating algorithm of FM-indexes for genomic data☆18Sep 27, 2017Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Interactive voxel rendering using R☆12May 23, 2019Updated 6 years ago
- ☆21Mar 19, 2025Updated last year
- ☆10Aug 29, 2012Updated 13 years ago
- An R package for manipulating phylogentic trees☆11Nov 1, 2020Updated 5 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆33Jan 11, 2024Updated 2 years ago
- MESS: Moshiri Exam Similarity Score☆14Oct 18, 2024Updated last year
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated last year
- Daily analyses of genomic SARS-CoV-2 data☆15Nov 8, 2022Updated 3 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year
- Efficient and fast querying and parsing of GTDB's data☆29Aug 21, 2025Updated 7 months ago
- An agile visualization dashboard for R☆19Oct 8, 2021Updated 4 years ago
- Gene family evolution analysis of OneKP capstone paper☆13May 10, 2021Updated 4 years ago
- Ecological mixed-effects ordination with lme4☆12May 9, 2016Updated 9 years ago
- Wavefront alignment algorithm (WFA) in Golang☆31Jul 26, 2025Updated 8 months ago
- examples of using Singularity containers for web-based products☆10Jan 2, 2018Updated 8 years ago