niemasd / CompactTreeLinks
Lightweight header-only C++ library for loading and traversing trees
☆20Updated 8 months ago
Alternatives and similar repositories for CompactTree
Users that are interested in CompactTree are comparing it to the libraries listed below
Sorting:
- Phylogenetic Likelihood Library 2 - experimental☆11Updated 6 months ago
- Tools for describing and manipulating demographic models.☆19Updated 6 months ago
- Phylogenetic inference using Stan☆23Updated 8 months ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆82Updated last year
- A Python library for fast, thread-safe computations on phylogenetic trees☆28Updated last month
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- Calculate distances between phylogenetic trees in R☆34Updated this week
- dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…☆21Updated 10 months ago
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- Lossless VCF compression☆20Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Histosketching Using Little Kmers☆56Updated 2 years ago
- ☆68Updated 2 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Updated last year
- De Bruijn graph representation in low memory☆35Updated last year
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 4 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Phylogenetic Likelihood Library☆29Updated 4 years ago
- Fast interval intersection library☆44Updated 3 months ago
- A utility for splitting mixed origin NGS reads☆10Updated 4 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆71Updated last year
- ☆14Updated 5 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated last year
- ☆24Updated 4 years ago
- PHYLIP package starting with version 4.0a☆19Updated last week
- Implementation of the treeSeg algorithm as an R package.☆14Updated 3 years ago