Lightweight header-only C++ library for loading and traversing trees
☆24Mar 9, 2025Updated 11 months ago
Alternatives and similar repositories for CompactTree
Users that are interested in CompactTree are comparing it to the libraries listed below
Sorting:
- TreeSwift: Fast tree module for Python 3☆86Nov 19, 2024Updated last year
- ☆15Aug 6, 2020Updated 5 years ago
- Phylogenetic Likelihood Library 2 - experimental☆11May 12, 2025Updated 9 months ago
- Explore spaces of phylogenetic trees☆29Aug 28, 2025Updated 6 months ago
- Functions for phylogenetic analyses☆36Nov 10, 2025Updated 3 months ago
- Library for analyzing and manipulating phylogenetic trees☆16Jan 22, 2026Updated last month
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆16Feb 16, 2026Updated last week
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆15Jun 21, 2024Updated last year
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 5 years ago
- Efficient calculation of phylogenetic distance matrices.☆50Oct 8, 2024Updated last year
- TN93 fast distance calculator☆19Jul 16, 2025Updated 7 months ago
- FMtree: A fast locating algorithm of FM-indexes for genomic data☆18Sep 27, 2017Updated 8 years ago
- ☆21Mar 19, 2025Updated 11 months ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- Phylogenetic inference using Stan☆23Mar 6, 2025Updated 11 months ago
- distance based phylogenetic placement☆27Feb 28, 2024Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- R package providing utilities for INLA☆31Nov 23, 2022Updated 3 years ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 5 months ago
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆31Jan 22, 2026Updated last month
- Efficient and fast querying and parsing of GTDB's data☆29Aug 21, 2025Updated 6 months ago
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 7 months ago
- MethyLYZR: a Naïve Bayesian framework for rapid brain tumor classification from sparse epigenomic data☆16Mar 3, 2025Updated 11 months ago
- GWAS Survival Package in R☆13Nov 16, 2023Updated 2 years ago
- Woltka: a versatile meta'omic data classifier☆77Sep 8, 2025Updated 5 months ago
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆42Updated this week
- ☆13Jul 26, 2021Updated 4 years ago
- ☆14Jul 4, 2015Updated 10 years ago
- Basic Python libraries used by UGent's HPC group☆15Updated this week
- SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.☆10Apr 16, 2020Updated 5 years ago
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 9 years ago
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- Bayesian estimation of the evolutionary rate matrix.☆10Dec 8, 2025Updated 2 months ago
- A GA4GH Draft Beacon implementation☆11Oct 23, 2015Updated 10 years ago
- ☆10Mar 29, 2025Updated 11 months ago
- ☆11Feb 16, 2021Updated 5 years ago
- community detection in multiplex networks☆10Apr 23, 2016Updated 9 years ago
- ☆12Aug 23, 2023Updated 2 years ago
- Out-of-the-box analysis and reporting tools for twitter☆38Nov 29, 2017Updated 8 years ago