GATB / MindTheGapLinks
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
☆37Updated 3 years ago
Alternatives and similar repositories for MindTheGap
Users that are interested in MindTheGap are comparing it to the libraries listed below
Sorting:
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 10 months ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- Structural variant (SV) analysis tools☆40Updated last year
- Structural variant caller☆55Updated 4 years ago
- ☆35Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 4 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 8 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆69Updated 2 months ago
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆35Updated 2 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 6 years ago
- ULTRA Locates Tandemly Repetitive Areas☆40Updated 3 months ago
- Structural variant caller for low-depth long-read sequencing data☆45Updated this week
- REINDEER REad Index for abuNDancE quERy☆56Updated 6 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 8 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 5 months ago
- Variant annotation and merging pipeline☆41Updated 6 months ago
- Pan-Genomic Matching Statistics☆55Updated last year
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆46Updated 2 years ago