GATB / MindTheGap
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
☆36Updated 2 years ago
Related projects: ⓘ
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 4 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆38Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Population-wide Deletion Calling☆34Updated 2 weeks ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆33Updated 7 months ago
- Pan-Genomic Matching Statistics☆45Updated 5 months ago
- Remove lambda phage reads from a fastq file☆27Updated last year
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Find Unique genomic Regions☆29Updated 2 weeks ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 7 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- ☆12Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆44Updated 3 years ago
- Ancient microbiome snakemake workflow☆19Updated 2 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆20Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆52Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆47Updated last week
- Animated GIF of flow cell performance from sequencing summary file.☆13Updated 6 years ago
- ☆29Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆28Updated 3 years ago
- ☆28Updated last year
- Output FASTQ summary statistics in JSON format☆29Updated last year
- Dot: An interactive dot plot viewer for comparative genomics☆31Updated last year
- Correcting errors in noisy long reads using variation graphs☆49Updated last year
- WDL workflows for variant calling and assembly using ONT☆28Updated 2 months ago
- ☆25Updated 4 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆13Updated 4 years ago