MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
☆37Apr 20, 2022Updated 4 years ago
Alternatives and similar repositories for MindTheGap
Users that are interested in MindTheGap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.☆10Mar 3, 2023Updated 3 years ago
- GATB Minia assembly pipeline☆32Feb 2, 2023Updated 3 years ago
- ✏️ Genome assembly polishing & SNV detection☆73Updated this week
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Aug 6, 2020Updated 5 years ago
- DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of…☆40Jun 29, 2023Updated 2 years ago
- Construct a Physical Map from Linked Reads☆18Apr 1, 2026Updated 2 months ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- De novo genome assembly and multisample variant calling☆113Mar 28, 2019Updated 7 years ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 3 years ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated last year
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 9 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 5 months ago
- ☆10Jun 9, 2020Updated 6 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 9 months ago
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 6 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- Yet Another Chimeric Read Detector☆86Nov 7, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆20Dec 17, 2024Updated last year
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆15Jun 8, 2026Updated last week
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 8 months ago
- ☆24Apr 2, 2021Updated 5 years ago
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Nov 14, 2018Updated 7 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- Annotate non-coding regulatory vars using our GREEN-DB, prediction scores, conservation and pop AF☆20Jun 13, 2025Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆20Apr 10, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- modular k-mer count matrix and Bloom filter construction for large read collections☆88Mar 24, 2026Updated 2 months ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 2 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Recommended Graphtyper pipelines☆15Feb 22, 2021Updated 5 years ago
- Model and predict short DNA sequence features with neural networks☆81Jun 16, 2019Updated 7 years ago