GATB / MindTheGapLinks
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
☆36Updated 3 years ago
Alternatives and similar repositories for MindTheGap
Users that are interested in MindTheGap are comparing it to the libraries listed below
Sorting:
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 weeks ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- ☆35Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 2 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated last month
- Dot: An interactive dot plot viewer for comparative genomics☆34Updated 2 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- VNTR annotation using motif selection☆38Updated last month
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆45Updated 2 weeks ago
- ☆66Updated last month
- Haplotype-aware genome assembly toolkit☆30Updated 5 years ago
- DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of…☆38Updated 2 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆37Updated 6 months ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Pan-Genomic Matching Statistics☆54Updated last year
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆78Updated last month
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year