GATB / MindTheGapLinks
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
☆36Updated 3 years ago
Alternatives and similar repositories for MindTheGap
Users that are interested in MindTheGap are comparing it to the libraries listed below
Sorting:
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆57Updated last month
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 2 months ago
- ☆46Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 11 months ago
- ☆34Updated 5 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 8 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- Structural variant caller☆55Updated 3 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 months ago
- DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of…☆38Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆35Updated 5 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆70Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- Graph based multi genome aligner☆48Updated 4 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago