aquaskyline / 16GTLinks
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
☆27Updated last year
Alternatives and similar repositories for 16GT
Users that are interested in 16GT are comparing it to the libraries listed below
Sorting:
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Indel caller for DNA-seq or RNA-seq☆16Updated 2 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- ☆23Updated 2 months ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- sort genomic data☆36Updated 2 weeks ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- ☆14Updated 2 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 8 months ago
- ☆11Updated 7 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago