aquaskyline / 16GTLinks
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
☆27Updated last year
Alternatives and similar repositories for 16GT
Users that are interested in 16GT are comparing it to the libraries listed below
Sorting:
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- ☆23Updated last month
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- ☆11Updated 7 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Indel caller for DNA-seq or RNA-seq☆16Updated 2 years ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆41Updated 9 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Personal diploid genome creation and coordinate conversion☆30Updated 7 months ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago