Finn-Lab / SanntiSLinks
SMBGC Annotation using Neural Networks Trained on Interpro Signatures
☆29Updated 6 months ago
Alternatives and similar repositories for SanntiS
Users that are interested in SanntiS are comparing it to the libraries listed below
Sorting:
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆38Updated last month
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆23Updated last month
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆57Updated 7 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆22Updated 8 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆32Updated last year
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆77Updated 4 months ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆20Updated 2 months ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆23Updated 2 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆35Updated last year
- ☆21Updated 3 months ago
- HMmer Based UndeRstandinG of gene clustERs☆15Updated 5 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆44Updated 6 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated last month
- ☆31Updated 4 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated last month
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Updated 2 years ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆22Updated 7 months ago
- ☆11Updated 7 months ago
- metabolic heatmap☆21Updated 6 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 3 weeks ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 7 months ago
- ☆19Updated 2 years ago
- This is a repository for CAMPER.☆15Updated last year
- ☆21Updated 3 years ago