SMBGC Annotation using Neural Networks Trained on Interpro Signatures
☆30Apr 10, 2025Updated 10 months ago
Alternatives and similar repositories for SanntiS
Users that are interested in SanntiS are comparing it to the libraries listed below
Sorting:
- BiG-MEx implementation as Docker images and R packages☆13Feb 9, 2022Updated 4 years ago
- ☆32Jan 27, 2026Updated last month
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 5 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated 5 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆52Dec 22, 2024Updated last year
- BGC Detection and Classification Using Deep Learning☆156Nov 11, 2023Updated 2 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated last month
- A workflow and scripts for large-scale antiSMASH analyses☆47Apr 3, 2025Updated 11 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆39Feb 27, 2024Updated 2 years ago
- ☆11Feb 12, 2026Updated 2 weeks ago
- Functions for distance matrix objects in R.☆14Feb 23, 2026Updated last week
- ☆18Mar 20, 2025Updated 11 months ago
- Similarity networks of biosynthetic gene clusters☆155Updated this week
- Reaction Analysis through Imaging of Chemical Units☆16Dec 5, 2025Updated 2 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆96Aug 11, 2025Updated 6 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22May 14, 2023Updated 2 years ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated last month
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated last year
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 2 years ago
- ☆82Nov 27, 2025Updated 3 months ago
- ☆50Jan 4, 2026Updated last month
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Apr 5, 2024Updated last year
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- antiSMASH☆245Nov 20, 2025Updated 3 months ago
- GEne Cluster prediction with COnditional random fields.☆80Jan 24, 2026Updated last month
- Masked language models of biosynthetic gene clusters☆17Jul 27, 2022Updated 3 years ago
- Find clustered hits from a BLAST search☆134Jan 16, 2026Updated last month
- Discovery of conserved gene clusters in multiple genomes☆124Jan 16, 2026Updated last month
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆85Nov 13, 2025Updated 3 months ago
- KEGG Module Evaluation Tool☆32Nov 15, 2023Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Mar 25, 2022Updated 3 years ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆19May 11, 2022Updated 3 years ago
- An R package designed for drawing gene arrow maps☆96Sep 29, 2025Updated 5 months ago
- ☆18Dec 7, 2020Updated 5 years ago
- TransAnnot - a fast transcriptome annotation pipeline☆20Jan 22, 2025Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Feb 17, 2023Updated 3 years ago
- A package to annotate protein sequences☆61Feb 23, 2025Updated last year
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆22Jan 28, 2026Updated last month