gamcil / synthaserLinks
Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
☆24Updated 2 years ago
Alternatives and similar repositories for synthaser
Users that are interested in synthaser are comparing it to the libraries listed below
Sorting:
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆70Updated last month
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆44Updated 7 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆62Updated 8 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆83Updated 8 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆56Updated 4 months ago
- UFCG: Universal Fungal Core Genes☆34Updated last week
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆51Updated 6 months ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆50Updated 10 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆70Updated 3 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Discovery of conserved gene clusters in multiple genomes☆83Updated 2 months ago
- Bacterial Annotation by Learned Representation of Genes☆57Updated 4 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 5 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 months ago
- ☆73Updated last week
- ☆39Updated last month
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 4 months ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆21Updated 4 months ago
- PHANOTATE: a gene caller for phages.☆78Updated 8 months ago
- ☆30Updated 7 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- Machine-learning-based general bacterial promoter prediction tool.☆50Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 4 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated last month
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month