gamcil / synthaserLinks
Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
☆24Updated 2 years ago
Alternatives and similar repositories for synthaser
Users that are interested in synthaser are comparing it to the libraries listed below
Sorting:
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆56Updated 5 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆73Updated 2 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆38Updated 4 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆86Updated 2 weeks ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆46Updated 8 months ago
- Discovery of conserved gene clusters in multiple genomes☆83Updated 3 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆62Updated last week
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆28Updated 4 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- ☆39Updated 2 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆71Updated 4 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆18Updated last week
- UFCG: Universal Fungal Core Genes☆34Updated last month
- Pipeline for major biological analyses.☆35Updated 3 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆51Updated 6 months ago
- ☆30Updated 8 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated last week
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- ☆19Updated 3 years ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated last year
- Locate antiviral defence systems in prokaryotic genomes☆57Updated 10 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 4 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 months ago
- Learning and Aligning Large Protein Families with support of protein language models.☆27Updated this week
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆37Updated last year
- PHANOTATE: a gene caller for phages.☆78Updated 8 months ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆45Updated 2 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago