riazn / bms038_analysisLinks
Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also http://www.ioexplorer.org for interactive visuallization
☆51Updated 7 years ago
Alternatives and similar repositories for bms038_analysis
Users that are interested in bms038_analysis are comparing it to the libraries listed below
Sorting:
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Immunology-related bioinformatics data and tools☆75Updated last year
- GLASS consortium☆42Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆78Updated 7 months ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- ☆47Updated 9 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- ☆59Updated 5 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- ☆58Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year
- ☆30Updated 7 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- ☆62Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 6 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated 2 months ago
- An R toolkit for estimation of cell composition from bulk expression data☆79Updated 3 months ago