riazn / bms038_analysis
Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also http://www.ioexplorer.org for interactive visuallization
☆51Updated 7 years ago
Alternatives and similar repositories for bms038_analysis:
Users that are interested in bms038_analysis are comparing it to the libraries listed below
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆31Updated 5 years ago
- collection of notebooks with different cytoscape workflows☆49Updated last year
- ☆47Updated 2 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated last year
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- ☆53Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆74Updated last week
- ☆61Updated last year
- ☆78Updated last year
- ☆64Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ☆33Updated 5 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆19Updated 2 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated last year
- Integrative pathway enrichment analysis of multivariate omics data☆107Updated 7 months ago
- ☆59Updated 6 months ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆67Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 9 months ago
- ☆48Updated 4 years ago
- scRNA-seq cell type identification☆44Updated 5 years ago