DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data
☆32May 1, 2025Updated 10 months ago
Alternatives and similar repositories for DISCOVER
Users that are interested in DISCOVER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R scripts used for MYC analyses☆10Jan 30, 2018Updated 8 years ago
- Curated list of TCGA resources☆59Nov 10, 2017Updated 8 years ago
- ☆11Apr 25, 2024Updated last year
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Oct 18, 2024Updated last year
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- ☆11Aug 21, 2018Updated 7 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆14Nov 13, 2025Updated 4 months ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Jan 28, 2022Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 6 years ago
- ☆12Apr 26, 2020Updated 5 years ago
- ☆17May 15, 2024Updated last year
- dN/dS methods to quantify selection in cancer and somatic evolution☆232May 15, 2025Updated 10 months ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆54Feb 12, 2018Updated 8 years ago
- Spatial Simulation of Tumor Growth☆14Feb 24, 2017Updated 9 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆150Sep 9, 2020Updated 5 years ago
- ☆13Sep 24, 2025Updated 5 months ago
- A framework to infer mutational signatures in cancer over time☆56Jul 9, 2019Updated 6 years ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 6 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- Software and analysis of metabolism studies across multiple cancer types☆10Sep 5, 2017Updated 8 years ago
- An R package to interpret biological trends from DNA methylation data☆18May 24, 2022Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆19Jan 8, 2024Updated 2 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Sep 30, 2018Updated 7 years ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- ☆11Jun 23, 2017Updated 8 years ago
- Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Canc…☆30Mar 9, 2026Updated 2 weeks ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated last year
- ☆17Jan 9, 2023Updated 3 years ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- identifying mutational significance in cancer genomes☆62Nov 16, 2022Updated 3 years ago
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Oct 28, 2022Updated 3 years ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15May 8, 2015Updated 10 years ago
- DNA methylation analysis notes from Ming Tang☆93Sep 19, 2019Updated 6 years ago
- ☆63Dec 27, 2023Updated 2 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆47Oct 13, 2025Updated 5 months ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆173Jan 28, 2026Updated last month
- Identifying recurrent mutations in cancer☆39Mar 4, 2021Updated 5 years ago