BioinformaticsFMRP / TCGAbiolinks
TCGAbiolinks
☆302Updated 5 months ago
Alternatives and similar repositories for TCGAbiolinks:
Users that are interested in TCGAbiolinks are comparing it to the libraries listed below
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆454Updated 2 months ago
- R package for integrating and analyzing multiple single-cell datasets☆399Updated this week
- Visualization of Functional Enrichment Result☆237Updated last week
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆258Updated 3 months ago
- NicheNet: predict active ligand-target links between interacting cells☆506Updated 4 months ago
- ChIP peak Annotation, Comparison and Visualization☆233Updated last week
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆474Updated 2 months ago
- A toolkit for single-cell immune profiling☆320Updated this week
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆281Updated 4 years ago
- Fast Gene Set Enrichment Analysis☆381Updated last month
- Community-provided extensions to Seurat☆319Updated last month
- ☆282Updated 2 years ago
- ☆360Updated last week
- tools and notes for spatial omics☆258Updated 3 months ago
- Inferring CNV from Single-Cell RNA-Seq☆588Updated 2 months ago
- High dimensional weighted gene co-expression network analysis☆372Updated last week
- Cell types enrichment analysis☆191Updated 7 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆312Updated this week
- Clone of the Bioconductor repository for the SingleR package.☆182Updated last week
- Single-cell Transcriptome and Regulome Analysis Pipeline☆279Updated last year
- Multi-Omics Factor Analysis☆236Updated 4 years ago
- Interactively analyze single cell genomic data☆181Updated this week
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆424Updated 7 months ago
- ☆186Updated 2 months ago
- Intro to ChIPseq using HPC☆293Updated last year
- Differential expression of RNA-seq data using the Negative Binomial☆367Updated 2 months ago
- ☆219Updated 6 months ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.☆222Updated last week
- Single RNA-seq data analysis with R (Finland, May, 2019)☆218Updated 2 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆433Updated 8 months ago