BioinformaticsFMRP / TCGAbiolinks
TCGAbiolinks
☆315Updated 2 weeks ago
Alternatives and similar repositories for TCGAbiolinks:
Users that are interested in TCGAbiolinks are comparing it to the libraries listed below
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆461Updated 5 months ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆483Updated 2 weeks ago
- tools and notes for spatial omics☆284Updated last month
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆281Updated 6 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆319Updated this week
- R package for integrating and analyzing multiple single-cell datasets☆408Updated 3 months ago
- Fast Gene Set Enrichment Analysis☆396Updated this week
- Visualization of Functional Enrichment Result☆243Updated last week
- Community-provided extensions to Seurat☆330Updated 5 months ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.☆237Updated last week
- ChIP peak Annotation, Comparison and Visualization☆233Updated last week
- Inferring CNV from Single-Cell RNA-Seq☆605Updated 2 months ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆481Updated 11 months ago
- ☆377Updated 3 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆460Updated last month
- ☆389Updated 3 years ago
- A toolkit for single-cell immune profiling☆330Updated 3 weeks ago
- Materials for short, half-day workshops☆325Updated last week
- ☆230Updated 9 months ago
- ☆192Updated last month
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆390Updated last week
- NicheNet: predict active ligand-target links between interacting cells☆534Updated 2 weeks ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆563Updated 5 months ago
- ☆284Updated 2 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆288Updated last year
- Single RNA-seq data analysis with R (Finland, May, 2019)☆222Updated 2 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆279Updated 2 years ago
- Dataset distribution for Seurat☆137Updated last month
- Analysis Pipeline for Single Cell ATAC-seq☆317Updated last year
- ☆141Updated 6 years ago