srp33 / TCGA_RNASeq_ClinicalLinks
☆62Updated 5 years ago
Alternatives and similar repositories for TCGA_RNASeq_Clinical
Users that are interested in TCGA_RNASeq_Clinical are comparing it to the libraries listed below
Sorting:
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- Code for biostar tutorials - mostly R and Perl☆50Updated last year
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- ☆33Updated 7 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- RNA-seq data analysis practical☆60Updated 11 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated last year
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- nucleosome calling using ATAC-seq☆107Updated 4 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆170Updated 2 years ago
- Easily download publicly available GWAS summary statistics.☆76Updated last year
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 9 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated 2 months ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆105Updated 3 years ago
- R package for analyzing single-cell RNA-seq data☆176Updated last year
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆61Updated 6 years ago
- deconstructSigs☆143Updated 2 years ago
- ☆35Updated 9 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- Transcript quantification import for modular pipelines☆141Updated last week
- microRNA profiling pipeline☆79Updated 3 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- GLASS consortium☆42Updated 5 years ago
- Batch effects and the effective design of single-cell gene expression studies☆104Updated 6 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year