☆62Aug 4, 2020Updated 6 years ago
Alternatives and similar repositories for TCGA_RNASeq_Clinical
Users that are interested in TCGA_RNASeq_Clinical are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 软件方面的包 (包括各种芯片数据处理，NGS数据处理，差异分析等等！)☆14Apr 23, 2016Updated 10 years ago
- R implementation of the BAGEL method to call for gene essentiality significance☆11May 1, 2018Updated 8 years ago
- This repository contains the source codes for the manuscript being reviewed.☆10May 20, 2017Updated 9 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆46Updated this week
- Scripts to analyze TCGA data☆139Jul 1, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Nov 27, 2017Updated 8 years ago
- CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer☆20Jan 21, 2019Updated 7 years ago
- Source code for ScanGEO Shiny App☆15Apr 18, 2022Updated 4 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 14 years ago
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- wgs_pipeline☆18Dec 3, 2013Updated 12 years ago
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Oct 28, 2022Updated 4 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆38Mar 20, 2023Updated 3 years ago
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Feb 20, 2014Updated 12 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An R client for broads firehose pipeline, providing TCGA data sets☆61Jun 25, 2019Updated 7 years ago
- ☆13Jun 24, 2016Updated 10 years ago
- ☆11Dec 3, 2013Updated 12 years ago
- An open-source R package for omics data integrative analysis in terms of network, evolution and ontology☆18Jan 4, 2024Updated 2 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32May 31, 2016Updated 10 years ago
- Gene Expression Omnibus Analysis with Shiny☆40Jun 2, 2022Updated 4 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Jul 1, 2020Updated 6 years ago
- Materials on the analysis of microarray expression data; focus on re-analysis of public data ( http://tinyurl.com/cruk-microarray)☆56Feb 21, 2017Updated 9 years ago
- From IDAT to beta.☆25Jul 13, 2018Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer☆13Oct 6, 2026Updated 3 weeks ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Jul 7, 2016Updated 10 years ago
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆34Jul 10, 2015Updated 11 years ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Apr 24, 2017Updated 9 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Mar 29, 2019Updated 7 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆15Dec 3, 2018Updated 7 years ago
- ☆10Jul 16, 2021Updated 5 years ago
- Scripts to recreate figures from the SC3 paper☆41Mar 1, 2017Updated 9 years ago
- An R package for inferring the subclonal architecture of tumors☆125Mar 15, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆32Jul 11, 2018Updated 8 years ago
- 361 Division - Scientific Training, Education and Learning☆28Oct 1, 2020Updated 6 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated last year
- Genetics training camp☆21Sep 8, 2020Updated 6 years ago
- Git使用手册☆19Mar 10, 2019Updated 7 years ago
- Virtual Pharmacist is a web tool that interprets personal genome for the impact of genetic variation on drug response. It can take varian…☆13Nov 16, 2015Updated 10 years ago
- ☆35Feb 11, 2026Updated 8 months ago