Alternatives and similar repositories for TCGA_RNASeq_Clinical:

Users that are interested in TCGA_RNASeq_Clinical are comparing it to the libraries listed below

• mxxdxxx / FirebrowseR
  An R client for broads firehose pipeline, providing TCGA data sets
  ☆60Updated 5 years ago
• obigriffith / biostar-tutorials
  Code for biostar tutorials - mostly R and Perl
  ☆50Updated 9 months ago
• OmnesRes / onco_lnc
  ☆35Updated 8 years ago
• riazn / bms038_analysis
  Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…
  ☆51Updated 7 years ago
• Nik-Zainal-Group / signature.tools.lib
  R package containing useful functions for mutational signature analysis
  ☆81Updated last week
• HumanCellAtlas / skylab
  Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines
  ☆48Updated last month
• mgonzalezporta / TeachingMaterial
  RNA-seq data analysis practical
  ☆61Updated 10 years ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 4 years ago
• pachterlab / kallisto-transcriptome-indices
  Reference transcriptome indices build from kallisto for popular organisms
  ☆42Updated last year
• cancer-genomics / delfi_scripts
  ☆72Updated 3 years ago
• icbi-lab / Immunophenogram
  ☆40Updated 7 years ago
• genome / sciclone
  An R package for inferring the subclonal architecture of tumors
  ☆118Updated last year
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆36Updated 6 years ago
• hdng / clonevol
  Inferring and visualizing clonal evolution in multi-sample cancer sequencing
  ☆147Updated 4 years ago
• BradnerLab / pipeline
  bradner lab computation pipeline scripts
  ☆54Updated 3 years ago
• broadinstitute / DLBCL_Nat_Med_April_2018
  ☆12Updated 4 years ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆54Updated 4 years ago
• slowkow / snakefiles
  Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
  ☆92Updated 7 years ago
• GreenleafLab / NucleoATAC
  nucleosome calling using ATAC-seq
  ☆106Updated 4 years ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆109Updated 9 months ago
• bioinformatics-core-shared-training / CRUK_CI_RNAseq_course
  Base CRUK Cambridge Institute RNAseq Course
  ☆21Updated 5 years ago
• wbaopaul / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆76Updated 2 months ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆93Updated 7 months ago
• gavinha / TitanCNA
  Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
  ☆97Updated 4 years ago
• hemberg-lab / SC3-paper-figures
  Scripts to recreate figures from the SC3 paper
  ☆40Updated 8 years ago
• bcgsc / mirna
  microRNA profiling pipeline
  ☆77Updated 3 years ago
• TrinityCTAT / Trinity_CTAT
  ☆116Updated last year
• YangLab / CIRCexplorer
  A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …
  ☆61Updated 5 years ago
• sansomlab / tenx
  Pipelines for the analysis of 10x single-cell RNA-sequencing data
  ☆57Updated last year
• chrisamiller / fishplot
  Create timecourse "fish plots" that show changes in the clonal architecture of tumors
  ☆167Updated last year