srp33 / TCGA_RNASeq_Clinical
☆60Updated 4 years ago
Alternatives and similar repositories for TCGA_RNASeq_Clinical:
Users that are interested in TCGA_RNASeq_Clinical are comparing it to the libraries listed below
- ☆72Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆73Updated this week
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆60Updated 5 years ago
- Code for biostar tutorials - mostly R and Perl☆51Updated 6 months ago
- ☆40Updated 6 years ago
- R package containing useful functions for mutational signature analysis☆80Updated this week
- ☆34Updated 8 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆31Updated 5 years ago
- Scripts to recreate figures from the SC3 paper☆38Updated 7 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 4 years ago
- Easily download publicly available GWAS summary statistics.☆75Updated last year
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- Mouse cell atlas☆60Updated 4 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- ☆43Updated 6 years ago
- An R package for inferring the subclonal architecture of tumors☆117Updated last year
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆91Updated 4 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆76Updated 2 years ago
- ☆53Updated this week
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- ☆33Updated 6 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆105Updated 6 months ago
- Bioinformatics Workflows☆20Updated 4 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆92Updated 7 years ago
- ☆116Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆70Updated 8 months ago