GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC
☆68Sep 10, 2023Updated 2 years ago
Alternatives and similar repositories for GDCRNATools
Users that are interested in GDCRNATools are comparing it to the libraries listed below
Sorting:
- ☆17Jan 9, 2023Updated 3 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆18Jun 29, 2021Updated 4 years ago
- LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network☆13Feb 15, 2022Updated 4 years ago
- An R package for generating comparative regional association plots☆18Sep 30, 2025Updated 5 months ago
- Survival Analysis for Protein-Level TCGA Analysis☆11Nov 30, 2018Updated 7 years ago
- An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs☆10Jul 13, 2019Updated 6 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆48Feb 10, 2026Updated 3 weeks ago
- R htmlwidget package for ideogram.js☆15Oct 26, 2022Updated 3 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆14Nov 13, 2025Updated 3 months ago
- Scripts to analyze TCGA data☆130Mar 16, 2024Updated last year
- cfSNV: An R tool of sensitively detecting tumor mutations from cell-free DNA in blood☆14Apr 29, 2023Updated 2 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Nov 20, 2019Updated 6 years ago
- Cell types enrichment analysis☆206May 27, 2024Updated last year
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- ☆12Sep 24, 2020Updated 5 years ago
- A shell to facilitate loading / running CIBERSORT software in structured environments☆26May 9, 2018Updated 7 years ago
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…☆15May 25, 2025Updated 9 months ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…☆10Apr 15, 2025Updated 10 months ago
- Pan cancer summary statistics from meta analyses of UK Biobank and Kaiser GERA cohorts.☆17Jul 15, 2020Updated 5 years ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆32Dec 9, 2021Updated 4 years ago
- circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line dri…☆30Dec 19, 2023Updated 2 years ago
- ☆17Dec 15, 2017Updated 8 years ago
- Assessing enrichment of complex disease or trait associations among QTLs☆15Jun 15, 2020Updated 5 years ago
- The Cancer bioMarker Prediction Pipeline (CAMPP)☆19Oct 25, 2020Updated 5 years ago
- ☆294Apr 2, 2019Updated 6 years ago
- Code for biostar tutorials - mostly R and Perl☆50Jul 31, 2024Updated last year
- R package☆22Dec 16, 2023Updated 2 years ago
- PRS-on-SPARK☆18Feb 4, 2021Updated 5 years ago
- MSigDB gene sets for multiple organisms in a tidy data format☆84Jul 22, 2025Updated 7 months ago
- Portable WDL workflows for IDseq production pipelines☆32Jan 19, 2022Updated 4 years ago
- Gene Fusion Visualiser☆51Jan 15, 2023Updated 3 years ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆46Feb 7, 2018Updated 8 years ago
- ☆13Feb 12, 2026Updated 3 weeks ago
- ☆10Jan 20, 2023Updated 3 years ago
- Binaries for tools used in genetics in an R package☆12Apr 7, 2025Updated 10 months ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Feb 12, 2026Updated 3 weeks ago
- ☆12Apr 26, 2020Updated 5 years ago