CompEpigen / ezASCATLinks
Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R
☆12Updated 3 years ago
Alternatives and similar repositories for ezASCAT
Users that are interested in ezASCAT are comparing it to the libraries listed below
Sorting:
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆13Updated 3 months ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated 2 months ago
- ☆17Updated 2 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated 3 weeks ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- workshop website on readthedocs☆20Updated last month
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆15Updated 3 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 2 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Updated 7 years ago
- R package wrapping bedtools☆44Updated 7 months ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- Single Cell Analysis Automated Workflow☆28Updated 2 years ago
- DriverPower☆26Updated 9 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- An Interactive Consensus Clustering framework for Cross-platform data analysis☆14Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- ☆17Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ☆12Updated 6 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Explore the cancer relevance of your gene list☆52Updated last month