keyuan / ccubeLinks
Bayesian mixture models for estimating and clustering cancer cell fractions
☆24Updated 2 years ago
Alternatives and similar repositories for ccube
Users that are interested in ccube are comparing it to the libraries listed below
Sorting:
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 7 months ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated this week
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- DriverPower☆26Updated 6 months ago
- Explore the cancer relevance of your gene list☆51Updated 4 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Workflow for Sequenza, cellularity and ploidy☆19Updated last month
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 4 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 5 months ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated this week
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 6 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated 9 months ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated 3 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated last month