keyuan / ccube
Bayesian mixture models for estimating and clustering cancer cell fractions
☆24Updated 2 years ago
Alternatives and similar repositories for ccube:
Users that are interested in ccube are comparing it to the libraries listed below
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- Next-Gen Sequencing tools from the Horvath Lab☆39Updated this week
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data☆11Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated last month
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆27Updated 2 years ago
- Dockstore implementation of CGP core WGS analysis☆30Updated 4 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆17Updated 2 months ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 2 years ago
- ☆18Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 3 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 2 weeks ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated 6 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Codes and Data for FFPEsig manuscript☆15Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated 7 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 7 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 5 months ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 2 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆21Updated last year
- RAGE-seq scripts☆18Updated 3 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago