PCAWG-11 / Evolution
Code accompanying The Evolutionary history of 2,658 cancers
☆46Updated 3 years ago
Alternatives and similar repositories for Evolution:
Users that are interested in Evolution are comparing it to the libraries listed below
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- An R package to time somatic mutations☆61Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- ☆40Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last week
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- ☆47Updated 2 months ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆70Updated 10 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆19Updated 5 years ago
- ☆38Updated 5 years ago
- ☆32Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 10 months ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆27Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- ☆33Updated 5 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated last year
- Next-Gen Sequencing tools from the Horvath Lab☆40Updated this week
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ☆28Updated 6 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated last week