jokergoo / rGREATView external linksLinks
GREAT Analysis - Functional Enrichment on Genomic Regions
☆97Jan 30, 2026Updated 2 weeks ago
Alternatives and similar repositories for rGREAT
Users that are interested in rGREAT are comparing it to the libraries listed below
Sorting:
- ☆10Jan 20, 2023Updated 3 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Nov 7, 2025Updated 3 months ago
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- ☆19Oct 27, 2021Updated 4 years ago
- A toolkit for analyzing architectural stripes☆20Dec 1, 2024Updated last year
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Nov 16, 2020Updated 5 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 4 years ago
- Scripts to reproduce analyses of tradeSeq paper.☆16Feb 5, 2020Updated 6 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆199Jan 30, 2026Updated 2 weeks ago
- A framework to infer mutational signatures in cancer over time☆56Jul 9, 2019Updated 6 years ago
- chromatin Variability Across Regions (of the genome!)☆185Jul 10, 2024Updated last year
- ☆18Oct 4, 2023Updated 2 years ago
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated 3 weeks ago
- A General Framework for Consensus Partitioning☆65Jan 30, 2026Updated 2 weeks ago
- Single Cell Cluster Evaluation☆99Jul 28, 2021Updated 4 years ago
- This is the ensembldb development repository.☆36Aug 18, 2025Updated 5 months ago
- Simplify functional enrichment results☆124Jan 30, 2026Updated 2 weeks ago
- Create cisTarget databases☆55Jun 18, 2025Updated 7 months ago
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 3 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Jul 12, 2023Updated 2 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆268May 5, 2023Updated 2 years ago
- Read HOMER motif analysis output in R.☆17Mar 1, 2018Updated 7 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Jun 17, 2025Updated 8 months ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Aug 8, 2023Updated 2 years ago
- ☆12Apr 26, 2020Updated 5 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆29Oct 1, 2020Updated 5 years ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Dec 20, 2022Updated 3 years ago
- An R interface to the MEME Suite☆54Jan 7, 2026Updated last month
- A tool to find sequencing data and metadata from public databases.☆594Aug 13, 2024Updated last year
- ☆17Jul 13, 2024Updated last year
- Codes and Data for FFPEsig manuscript☆17Jan 17, 2024Updated 2 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆237Dec 2, 2025Updated 2 months ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆35Oct 7, 2024Updated last year
- Signature Analysis and Visualization for Single-Cell RNA-seq☆175Jun 10, 2024Updated last year
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago