jokergoo / rGREATLinks
GREAT Analysis - Functional Enrichment on Genomic Regions
☆87Updated 2 months ago
Alternatives and similar repositories for rGREAT
Users that are interested in rGREAT are comparing it to the libraries listed below
Sorting:
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 4 months ago
- An R interface to the MEME Suite☆50Updated 7 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆39Updated 5 months ago
- ☆38Updated 2 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 2 weeks ago
- Integrative pathway enrichment analysis of multivariate omics data☆109Updated 2 weeks ago
- Lightweight Iterative Gene set Enrichment in R☆56Updated 8 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last week
- ☆30Updated 6 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 2 months ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆84Updated 4 months ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆70Updated last month
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Identify and correct invalid gene symbols☆58Updated 6 months ago
- R package containing useful functions for mutational signature analysis☆81Updated this week
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- Tutorial Website☆59Updated 4 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 9 months ago
- R package wrapping bedtools☆41Updated 2 months ago
- R package for genomic feature analysis and visualization☆78Updated last month
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated last year
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- ATAC-seq Quality Control☆23Updated last month
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- GENome Organisation Visual Analytics☆77Updated 4 months ago