IARCbioinfo / awesome-TCGALinks
Curated list of TCGA resources
☆57Updated 8 years ago
Alternatives and similar repositories for awesome-TCGA
Users that are interested in awesome-TCGA are comparing it to the libraries listed below
Sorting:
- ☆41Updated 7 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated 3 weeks ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- Identify and correct invalid gene symbols☆60Updated last year
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆29Updated 10 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆66Updated 3 years ago
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆27Updated 5 years ago
- DriverPower☆26Updated 11 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Cancer circRNA identification pipeline with an ensemble approach☆18Updated last year
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- Quantifying copy number signatures from absolute copy number profiles☆26Updated 5 months ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆95Updated 3 weeks ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- An R for fast and flexible DNA methylation analysis☆35Updated last month
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 3 months ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆49Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- ☆41Updated 3 years ago