IARCbioinfo / awesome-TCGALinks
Curated list of TCGA resources
☆56Updated 7 years ago
Alternatives and similar repositories for awesome-TCGA
Users that are interested in awesome-TCGA are comparing it to the libraries listed below
Sorting:
- ☆41Updated 7 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 10 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Differential ATAC-seq toolkit☆27Updated last year
- Model-based tumour subclonal deconvolution using population genetics☆33Updated 2 weeks ago
- An R for fast and flexible DNA methylation analysis☆33Updated 2 months ago
- Explore the cancer relevance of your gene list☆52Updated 6 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- Identify and correct invalid gene symbols☆59Updated 10 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Statistical power studies for multi-omics experiments.☆32Updated 7 months ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- Lightweight Iterative Gene set Enrichment in R☆57Updated 11 months ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆65Updated 2 years ago
- ☆32Updated last year
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆13Updated last year
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 11 months ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 6 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated last week
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆27Updated 5 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated 3 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆47Updated 2 years ago