IARCbioinfo / awesome-TCGALinks
Curated list of TCGA resources
☆56Updated 8 years ago
Alternatives and similar repositories for awesome-TCGA
Users that are interested in awesome-TCGA are comparing it to the libraries listed below
Sorting:
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- ☆41Updated 7 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆29Updated 10 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated 2 weeks ago
- Identify and correct invalid gene symbols☆60Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last week
- Explore the cancer relevance of your gene list☆52Updated last week
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 7 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- documentation for trackViewer☆29Updated 6 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆66Updated 2 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- An R for fast and flexible DNA methylation analysis☆35Updated this week
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆27Updated 5 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆95Updated last month
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated last month
- Phenome Exome Association and Correlation Of Key phenotypes☆30Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 2 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- Statistical power studies for multi-omics experiments.☆32Updated 10 months ago