Alternatives and similar repositories for pancancer:

Users that are interested in pancancer are comparing it to the libraries listed below

• mdozmorov / TCGAsurvival
  Scripts to analyze TCGA data
  ☆120Updated last year
• compgenome365 / TCGA-Assembler-2
  TCGA-Assembler 2
  ☆76Updated 6 years ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆90Updated 4 years ago
• mdozmorov / Immuno_notes
  Immunology-related bioinformatics data and tools
  ☆72Updated 11 months ago
• tabdelaal / scRNAseq_Benchmark
  Bench-marking classification tools for scRNA-seq data
  ☆186Updated 2 years ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆144Updated last year
• dviraran / xCell
  Cell types enrichment analysis
  ☆194Updated 10 months ago
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆102Updated last week
• KevinMenden / scaden
  Deep Learning based cell composition analysis with Scaden.
  ☆77Updated 5 months ago
• srp33 / TCGA_RNASeq_Clinical
  ☆61Updated 4 years ago
• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆86Updated 5 years ago
• digitalcytometry / ecotyper
  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
  ☆197Updated last year
• mematt / ml4calibrated450k
  This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estim…
  ☆22Updated 3 years ago
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆137Updated last year
• kundajelab / alzheimers_parkinsons
  Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
  ☆46Updated 4 years ago
• riazn / bms038_analysis
  Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…
  ☆51Updated 7 years ago
• Swarbricklab-code / BrCa_cell_atlas
  Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
  ☆113Updated 7 months ago
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆162Updated last year
• mskcc / RNAseqDB
  ☆141Updated 6 years ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆124Updated last year
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆58Updated 4 years ago
• ebecht / MCPcounter
  ☆58Updated 2 years ago
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆101Updated last year
• CRI-iAtlas / ImmuneSubtypeClassifier
  An R package for classification of immune subtypes, in cancer, using gene expression data.
  ☆46Updated 4 months ago
• TranslationalBioinformaticsUnit / singlecelldb
  An actionable database of publicly available single-cell RNA-seq data
  ☆41Updated 6 years ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆93Updated 6 months ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆100Updated last year
• bioinfo-ibms-pumc / SCSA
  SCSA: cell type annotation for single-cell RNA-seq data
  ☆90Updated 2 years ago
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆110Updated 4 months ago
• YosefLab / VISION
  Signature Analysis and Visualization for Single-Cell RNA-seq
  ☆165Updated 10 months ago