greenelab / pancancer

Related projects: ⓘ

• mdozmorov / TCGAsurvival
  Scripts to analyze TCGA data
  ☆114Updated 6 months ago
• compgenome365 / TCGA-Assembler-2
  TCGA-Assembler 2
  ☆74Updated 6 years ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆86Updated 3 years ago
• KevinMenden / scaden
  Deep Learning based cell composition analysis with Scaden.
  ☆71Updated 3 months ago
• mematt / ml4calibrated450k
  This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estim…
  ☆18Updated 2 years ago
• kundajelab / alzheimers_parkinsons
  Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
  ☆43Updated 4 years ago
• mskcc / RNAseqDB
  ☆139Updated 6 years ago
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆101Updated 2 months ago
• mdozmorov / Immuno_notes
  Immunology-related bioinformatics data and tools
  ☆67Updated 4 months ago
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆51Updated 3 years ago
• YeoLab / single-cell-bioinformatics
  Course material in notebook format for learning about single cell bioinformatics methods
  ☆99Updated 8 years ago
• tabdelaal / scRNAseq_Benchmark
  Bench-marking classification tools for scRNA-seq data
  ☆181Updated 2 years ago
• zhangyuqing / ComBat-seq
  Batch effect adjustment based on negative binomial regression for RNA sequencing count data
  ☆157Updated 3 years ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆180Updated 3 months ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆114Updated 4 months ago
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆153Updated 7 months ago
• digitalcytometry / ecotyper
  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
  ☆177Updated 5 months ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆132Updated 6 months ago
• 10XGenomics / single-cell-3prime-paper
  ☆83Updated 4 years ago
• eleozzr / desc
  Deep Embedding for Single-cell Clustering
  ☆87Updated 5 months ago
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆108Updated 2 years ago
• MarioniLab / MNN2017
  Code for the MNN manuscript figures
  ☆50Updated 5 years ago
• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆82Updated 5 years ago
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆71Updated 4 years ago
• bioinfo-ibms-pumc / SCSA
  SCSA: cell type annotation for single-cell RNA-seq data
  ☆80Updated last year
• pathint / reoa
  Relative Expression Ordering Analysis (REOA) package
  ☆20Updated last year
• SpatialTranscriptomicsResearch / st_pipeline
  ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …
  ☆78Updated 3 years ago
• Xinglab / DARTS
  Deep-learning Augmented RNA-seq analysis of Transcript Splicing
  ☆108Updated 7 months ago
• perslab / CELLECT
  CELLECT (CELL-type Expression-specific integration for Complex Traits)
  ☆69Updated last month
• aertslab / cisTopic
  cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
  ☆135Updated 5 months ago