greenelab / pancancer
Building classifiers using cancer transcriptomes across 33 different cancer-types
☆120Updated 5 years ago
Alternatives and similar repositories for pancancer:
Users that are interested in pancancer are comparing it to the libraries listed below
- Scripts to analyze TCGA data☆120Updated last year
- ☆90Updated 4 years ago
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆45Updated 4 years ago
- A continually expanding collection of cancer genomics notes and data☆102Updated 4 months ago
- Deep Learning based cell composition analysis with Scaden.☆76Updated 4 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆102Updated 8 years ago
- Bench-marking classification tools for scRNA-seq data☆185Updated 2 years ago
- ☆140Updated 6 years ago
- Immunology-related bioinformatics data and tools☆72Updated 10 months ago
- Cell types enrichment analysis☆194Updated 9 months ago
- TCGA-Assembler 2☆77Updated 6 years ago
- Multi-Omics Factor Analysis☆239Updated 4 years ago
- R package to access DoRothEA's regulons☆142Updated last year
- ☆61Updated 4 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆137Updated 11 months ago
- Single-cell RNA-seq Gene Expression Recovery☆110Updated 3 months ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆103Updated last year
- Scanpy use cases.☆82Updated 4 years ago
- ☆64Updated last year
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆91Updated 7 months ago
- CELLECT (CELL-type Expression-specific integration for Complex Traits)☆76Updated 7 months ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆165Updated 9 months ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆147Updated last month
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆174Updated 4 years ago
- SingleCellNet: classify single cells across species and platforms☆136Updated last year
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆197Updated 11 months ago
- R script for the covid balf data analysis☆65Updated 4 years ago
- Relative Expression Ordering Analysis (REOA) package☆20Updated 2 years ago
- Benchmarking computational single cell ATAC-seq methods☆182Updated 4 years ago