Building classifiers using cancer transcriptomes across 33 different cancer-types
☆127Apr 30, 2019Updated 7 years ago
Alternatives and similar repositories for pancancer
Users that are interested in pancancer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models☆23Oct 22, 2018Updated 7 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 10 years ago
- Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage☆12Aug 13, 2020Updated 5 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆46Jun 25, 2026Updated last month
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Nov 16, 2018Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Scripts to analyze TCGA data☆138Jul 1, 2026Updated 3 weeks ago
- Source code and data for "Pan-cancer analysis of bi-allelic alterations in homologous recombination (HR) DNA repair genes" ; See manuscri…☆13May 26, 2017Updated 9 years ago
- Curated list of TCGA resources☆61Nov 10, 2017Updated 8 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆48Mar 6, 2026Updated 4 months ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)☆10Jul 22, 2020Updated 6 years ago
- Training and evaluating a variational autoencoder for pan-cancer gene expression data☆175Jan 31, 2019Updated 7 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆54Feb 12, 2018Updated 8 years ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆50Nov 20, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- TCGA data acquisition and processing for Project Cognoma☆23Apr 19, 2018Updated 8 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- Open-source software pipeline for cancer classification from high-throughput data using machine learning.☆19Feb 19, 2019Updated 7 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Dec 8, 2019Updated 6 years ago
- Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…☆29Jan 3, 2020Updated 6 years ago
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- ☆35Sep 28, 2020Updated 5 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated 2 years ago
- Machine Learning to Detect Cancer Biomarkers from RNAseq Data☆36Aug 9, 2019Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Graph Neural Network model for survival analysis from multi-omics data☆14Mar 9, 2022Updated 4 years ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆13Oct 30, 2020Updated 5 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Aug 3, 2024Updated last year
- ☆20Jul 6, 2021Updated 5 years ago
- ☆12Sep 4, 2019Updated 6 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- Package to create MOVIE Plots☆12Oct 31, 2019Updated 6 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆46Mar 13, 2026Updated 4 months ago
- LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network☆14Feb 15, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Oct 18, 2024Updated last year
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 7 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆87Oct 4, 2018Updated 7 years ago
- DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data☆32May 1, 2025Updated last year
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 5 years ago