greenelab / pancancerLinks
Building classifiers using cancer transcriptomes across 33 different cancer-types
☆120Updated 6 years ago
Alternatives and similar repositories for pancancer
Users that are interested in pancancer are comparing it to the libraries listed below
Sorting:
- Scripts to analyze TCGA data☆124Updated last year
- ☆94Updated 4 years ago
- TCGA-Assembler 2☆77Updated 7 years ago
- A continually expanding collection of cancer genomics notes and data☆108Updated 2 months ago
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 5 years ago
- Deep Learning based cell composition analysis with Scaden.☆82Updated 11 months ago
- Immunology-related bioinformatics data and tools☆75Updated last year
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆105Updated 3 years ago
- ☆142Updated 7 years ago
- R package to access DoRothEA's regulons☆151Updated last year
- ☆58Updated 4 years ago
- Accurate and robust imputation of scRNA-seq data☆97Updated 6 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- ☆62Updated 5 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 9 years ago
- Cell types enrichment analysis☆202Updated last year
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆93Updated last year
- This contains the dataset for comparing scRNA-seq analysis methods☆91Updated 5 years ago
- ☆59Updated 3 years ago
- Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRN…☆123Updated last year
- Deep Embedding for Single-cell Clustering☆88Updated last year
- ☆47Updated 3 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated 3 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆95Updated 6 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆143Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- ☆85Updated 5 years ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- Code for the MNN manuscript figures☆50Updated 7 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 4 years ago