ju-lab / LungCancer_SV_timing_analysesLinks
☆11Updated 5 years ago
Alternatives and similar repositories for LungCancer_SV_timing_analyses
Users that are interested in LungCancer_SV_timing_analyses are comparing it to the libraries listed below
Sorting:
- ☆10Updated 2 years ago
- Python function for TMB snake plots☆16Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆11Updated 3 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated last month
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- ☆17Updated 11 months ago
- ☆16Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated last month
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- ☆12Updated last year
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆12Updated 11 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Updated last year
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 8 months ago
- Molecular Signatures Database (MSigDB) in a data frame☆17Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- DriverPower☆26Updated 5 months ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- Personalized prioritization of driver genes in cancer☆9Updated 3 years ago
- Materials presented at the BiocNYC meet-up☆12Updated 6 years ago
- ☆10Updated 5 years ago
- GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …☆10Updated last year
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 6 months ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Updated 4 years ago
- Explore the cancer relevance of your gene list