ju-lab / LungCancer_SV_timing_analysesLinks
☆12Updated 5 years ago
Alternatives and similar repositories for LungCancer_SV_timing_analyses
Users that are interested in LungCancer_SV_timing_analyses are comparing it to the libraries listed below
Sorting:
- Python function for TMB snake plots☆16Updated 5 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated last month
- mitochondrial variant analysis tools☆15Updated 4 years ago
- ☆17Updated last year
- Filter and prioritize fusion calls☆20Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- ☆12Updated last year
- DriverPower☆26Updated 10 months ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- ☆10Updated 2 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Updated 3 years ago
- Workflow for Sequenza, cellularity and ploidy☆24Updated 3 months ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated 2 weeks ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 7 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Updated last year
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last month
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- Code for EpiMap data browser☆14Updated last year
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 10 months ago
- Integrated workflow for SV calling from single-cell Strand-seq data☆24Updated 8 months ago
- ☆18Updated 4 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Updated 5 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year