ju-lab / LungCancer_SV_timing_analyses
☆11Updated 4 years ago
Alternatives and similar repositories for LungCancer_SV_timing_analyses:
Users that are interested in LungCancer_SV_timing_analyses are comparing it to the libraries listed below
- Python function for TMB snake plots☆16Updated 4 years ago
- ☆10Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆19Updated 3 months ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆15Updated last year
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Code for EpiMap data browser☆14Updated 8 months ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆12Updated 3 years ago
- Personalized prioritization of driver genes in cancer☆9Updated 2 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆11Updated 6 months ago
- ☆18Updated 7 months ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 3 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Materials presented at the BiocNYC meet-up☆12Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- BioCarta pathway images☆11Updated last year
- ☆11Updated 9 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆13Updated 8 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆17Updated 6 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 2 months ago
- ☆10Updated 4 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Updated last year
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Updated 4 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆11Updated 2 years ago