BioinformaticsFMRP / TCGAWorkflowLinks
TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
☆49Updated 2 years ago
Alternatives and similar repositories for TCGAWorkflow
Users that are interested in TCGAWorkflow are comparing it to the libraries listed below
Sorting:
- ☆41Updated 7 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Statistical power studies for multi-omics experiments.☆32Updated 9 months ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- ☆30Updated 7 years ago
- Identify and correct invalid gene symbols☆59Updated 11 months ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 4 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆66Updated 2 years ago
- repository for the single cell RNA-Seq workshop☆30Updated 4 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆45Updated 2 weeks ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆24Updated 3 months ago
- A General Framework for Consensus Partitioning☆63Updated 8 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆59Updated 3 years ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆26Updated 3 years ago
- Personal notes about work- and coding-related topics☆20Updated 2 years ago
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆29Updated 10 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.☆25Updated 6 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Course Materials for Genomics Data Mining☆22Updated last month
- GLASS consortium☆42Updated 5 years ago
- ☆62Updated 5 years ago