Alternatives and similar repositories for TCGAWorkflow

Users that are interested in TCGAWorkflow are comparing it to the libraries listed below

• icbi-lab / Immunophenogram
  ☆40Updated 7 years ago
• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆43Updated 4 years ago
• foreverdream2 / dysfunction_interaction_test
  ☆29Updated 6 years ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆45Updated 2 years ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆27Updated 4 years ago
• Gibbsdavidl / Immune-Subtype-Clustering
  This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".
  ☆18Updated 5 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆58Updated 7 months ago
• andygxzeng / AMLHierarchies
  Analysis notebooks and data for AML hierarchies paper
  ☆16Updated last year
• fpbarthel / GLASS
  GLASS consortium
  ☆39Updated 5 years ago
• wuaipinglab / ImmuCC
  Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
  ☆25Updated 3 years ago
• bigbioinformatics / single_cell_rna_seq_workshop
  repository for the single cell RNA-Seq workshop
  ☆29Updated 4 years ago
• ebecht / MCPcounter
  ☆58Updated 3 years ago
• DavisLaboratory / singscore
  An R/Bioconductor package that implements a single-sample molecular phenotyping approach
  ☆43Updated 7 months ago
• srp33 / TCGA_RNASeq_Clinical
  ☆61Updated 4 years ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆57Updated 8 months ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆47Updated last year
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• chunjie-sam-liu / GSCALite
  GSCALite: Gene set for cancer analysis
  ☆23Updated 3 years ago
• kenichi-shimada / depmap-analysis
  This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…
  ☆13Updated 3 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆46Updated last year
• dosorio / rPanglaoDB
  An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.
  ☆27Updated 2 years ago
• BaderLab / Cytoscape_workflows
  collection of notebooks with different cytoscape workflows
  ☆50Updated 2 years ago
• priyanka8993 / EMT_score_calculation
  ☆20Updated 3 years ago
• pachterlab / kallisto-transcriptome-indices
  Reference transcriptome indices build from kallisto for popular organisms
  ☆42Updated last year
• schultzelab / Shiny-Seq
  Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data
  ☆21Updated 6 years ago
• peterawe / CMScaller
  ☆29Updated 5 years ago
• ddhb / Workflow_of_ChIPSeq
  R code in workflow of chip-seq analysis
  ☆11Updated 5 years ago
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆37Updated 5 years ago
• crazyhottommy / pyflow-cellranger
  A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
  ☆16Updated 5 years ago