BioinformaticsFMRP / TCGAWorkflow
TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
☆42Updated last year
Alternatives and similar repositories for TCGAWorkflow:
Users that are interested in TCGAWorkflow are comparing it to the libraries listed below
- ☆40Updated 6 years ago
- ☆29Updated 6 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆42Updated 4 years ago
- Identify and correct invalid gene symbols☆59Updated 3 months ago
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- GLASS consortium☆39Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆48Updated 3 months ago
- From IDAT to beta.☆25Updated 6 years ago
- Explore and download data from the recount3 project☆33Updated 2 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆44Updated last year
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 5 years ago
- This repository contains course materials from JAX-BD2K workshop.☆31Updated 5 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆18Updated 5 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated 11 months ago
- Analysis notebooks and data for AML hierarchies paper☆16Updated last year
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆31Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆26Updated 2 years ago
- ☆47Updated last year
- ☆60Updated 4 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 3 weeks ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆41Updated 3 months ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆44Updated last year
- XEnograft Visualization & Analysis☆11Updated 2 months ago
- Analysis for svaseq paper☆19Updated 10 years ago
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Updated 3 years ago
- Statistical power studies for multi-omics experiments.☆30Updated last month
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago