icbi-lab / Immunophenogram
☆40Updated 6 years ago
Alternatives and similar repositories for Immunophenogram:
Users that are interested in Immunophenogram are comparing it to the libraries listed below
- ☆29Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- ☆46Updated last month
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Filtering of PDX samples for mouse derived reads☆26Updated 2 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆31Updated 3 years ago
- ☆43Updated 6 years ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 3 years ago
- GLASS consortium☆39Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ☆38Updated 4 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 5 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- scRNA-seq cell type identification☆44Updated 5 years ago
- Identify and correct invalid gene symbols☆59Updated 3 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated last year
- Dichotomous of innate immune landscape☆17Updated 5 years ago
- ☆33Updated 5 years ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆24Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- ☆14Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆44Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆27Updated 2 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated last year
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆42Updated 4 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆30Updated 6 years ago