icbi-lab / ImmunophenogramLinks
☆41Updated 7 years ago
Alternatives and similar repositories for Immunophenogram
Users that are interested in Immunophenogram are comparing it to the libraries listed below
Sorting:
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ☆30Updated 7 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Updated 4 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 3 months ago
- R package for Flexible dot plots☆29Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Identify and correct invalid gene symbols☆60Updated 11 months ago
- ☆59Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- GLASS consortium☆42Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆44Updated last year
- An R package to time somatic mutations☆64Updated 4 years ago
- ☆47Updated 10 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- ☆44Updated 7 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆43Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- A framework to infer mutational signatures in cancer over time☆56Updated 6 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 6 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Updated 5 years ago