mforde84 / RNAseq-Survival-Analysis-TCGA-KIRCLinks
☆11Updated 6 years ago
Alternatives and similar repositories for RNAseq-Survival-Analysis-TCGA-KIRC
Users that are interested in RNAseq-Survival-Analysis-TCGA-KIRC are comparing it to the libraries listed below
Sorting:
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated last week
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- ☆117Updated last year
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated last year
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated this week
- GLASS consortium☆39Updated 5 years ago
- microRNA profiling pipeline☆79Updated 3 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆52Updated 3 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆76Updated 2 months ago
- Mutational signature analysis for low statistics SNV data☆64Updated last year
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆139Updated 11 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 2 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆36Updated 3 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- A continually expanding collection of RNA-seq tools☆51Updated 9 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆113Updated 3 weeks ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- ☆75Updated 3 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆60Updated 7 months ago
- Clinical interpretation of somatic mutations in cancer☆47Updated 5 months ago
- Python package to annotate and visualize gene fusions.☆64Updated 10 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago