mforde84 / RNAseq-Survival-Analysis-TCGA-KIRCLinks
☆11Updated 7 years ago
Alternatives and similar repositories for RNAseq-Survival-Analysis-TCGA-KIRC
Users that are interested in RNAseq-Survival-Analysis-TCGA-KIRC are comparing it to the libraries listed below
Sorting:
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆50Updated 5 months ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆35Updated 3 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Updated 3 years ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆32Updated 2 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆82Updated 7 months ago
- Clinical interpretation of somatic mutations in cancer☆50Updated 10 months ago
- ☆38Updated 5 years ago
- MutSig2CV from Lawrence et al. 2014☆33Updated 5 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 3 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line dri…☆31Updated 2 years ago
- ☆44Updated 7 years ago
- Mutational signature analysis for low statistics SNV data☆64Updated last year
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆75Updated 3 years ago
- A continually expanding collection of RNA-seq tools☆53Updated 3 months ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- GLASS consortium☆42Updated 5 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 2 months ago
- ☆74Updated 4 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated last week
- RNA-seq Quantification of Alternative Polyadenylation☆50Updated 5 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- ☆62Updated 5 years ago