vsbuffalo / rna-seq-example
An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)
☆16Updated 12 years ago
Related projects ⓘ
Alternatives and complementary repositories for rna-seq-example
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Machine learning use cases for teaching☆13Updated 7 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Updated 8 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 5 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated last year
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated last year
- DriverPower☆26Updated 5 months ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- Make rapid visualizations of RNA-seq data in R☆18Updated 5 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 3 years ago
- Filter and prioritize fusion calls☆20Updated last month
- R package to quickly obtain count vectors from indexed bam files☆13Updated 3 years ago
- Personal diploid genome creation and coordinate conversion☆21Updated last month
- ☆12Updated 7 years ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 2 years ago
- interactive plots for differential expression analysis☆25Updated 2 months ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Updated 6 months ago
- ☆12Updated 4 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆17Updated 5 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 8 years ago
- Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)☆13Updated 3 years ago