vsbuffalo / rna-seq-exampleLinks
An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)
☆16Updated 13 years ago
Alternatives and similar repositories for rna-seq-example
Users that are interested in rna-seq-example are comparing it to the libraries listed below
Sorting:
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 8 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- Calculate and plot distributions of genomic ranges☆27Updated 8 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last week
- DriverPower☆26Updated 11 months ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 7 years ago
- 📊 An R package of RNA-seq workflow☆15Updated 3 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- a set of NGS pipelines☆24Updated this week
- Make rapid visualizations of RNA-seq data in R☆19Updated 3 months ago
- ☆13Updated 8 years ago
- Filter and prioritize fusion calls☆20Updated last year
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 6 years ago
- ☆23Updated 2 months ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 3 years ago
- Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)☆13Updated 4 years ago