A pure rust reimplementation of rapid-gzip by Maximilian Knespel and Holger Brunst
☆21Aug 10, 2026Updated 2 months ago
Alternatives and similar repositories for rapidgzip-rust
Users that are interested in rapidgzip-rust are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Homology-based ANI estimation at unprecedented scales🦀☆25Oct 4, 2026Updated 2 weeks ago
- Annotation-independent molecular-evidence archives for single-cell RNA-seq☆19Oct 8, 2026Updated last week
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Oct 11, 2026Updated last week
- ☆18Oct 12, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- How many distinct k-mers are there in a sequence?☆11Feb 4, 2026Updated 8 months ago
- Implementation of the u-index☆12Jul 19, 2025Updated last year
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Oct 9, 2026Updated last week
- kmer-counter☆19Updated this week
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆18Apr 1, 2026Updated 6 months ago
- Metax: Accurate Cross-Domain Taxon Profiling via a Probabilistic Model of Genome Coverage☆35Oct 12, 2026Updated last week
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 3 months ago
- Parallel Construction of Suffix Arrays in Rust☆26Updated this week
- Tearing through FASTA/Q sequences☆41Jul 9, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A decoder that automatically detects compression format (gzip, bzip2, xz, zstd) via external crates. Includes encoder as well.☆13Jan 8, 2026Updated 9 months ago
- ☆19Aug 25, 2026Updated last month
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- Mapping sequencing data to De Bruijn graphs, fast☆38Aug 31, 2026Updated last month
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆50Sep 30, 2026Updated 2 weeks ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 7 months ago
- ☆21Dec 26, 2025Updated 9 months ago
- ☆36Aug 11, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bitpacked sequence trait and implementation☆19Oct 4, 2026Updated 2 weeks ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Oct 6, 2026Updated last week
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆31Jan 22, 2026Updated 8 months ago
- Fast sequence distance estimates☆34Updated this week
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 3 years ago
- Hardware go brrr bounded context suffix array construction algorithm☆20Nov 1, 2023Updated 2 years ago
- An extensible and performant aligner and read mapper☆107Updated this week
- ☆27Jun 16, 2026Updated 4 months ago
- Rust bindings to Intelligent Storage Acceleration Library (ISA-L)☆15Feb 2, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 2bit file format implementation in Rust☆16Mar 27, 2026Updated 6 months ago
- A SIMD-accelerated library to compute random minimizers☆49Oct 2, 2026Updated 2 weeks ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 9 months ago
- The fastest priority queue☆40Updated this week
- Rust in bioinformatics and computational biology☆17Oct 22, 2022Updated 3 years ago
- One pure-Rust binary that finds genes in phages, viruses, giant viruses, crassphages, bacteria, archaea, eukaryotes — and raw sequencing …☆36Updated this week
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago