kmer-counter based on kache-hash
☆16Jul 7, 2026Updated last week
Alternatives and similar repositories for tuna
Users that are interested in tuna are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of a Backpack Quotient Filter☆13Jun 24, 2026Updated 3 weeks ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 7 months ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆20Jun 23, 2025Updated last year
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21May 31, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆44May 13, 2026Updated 2 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 4 months ago
- Bitpacked sequence trait and implementation☆19Jul 7, 2026Updated last week
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Compacted and colored de Bruijn graph construction and querying☆98Jul 1, 2026Updated 2 weeks ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆22Jan 22, 2026Updated 5 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Mapping sequencing data to De Bruijn graphs, fast☆37Updated this week
- A SIMD-accelerated library to compute random minimizers☆46Jul 7, 2026Updated last week
- ☆17Apr 6, 2023Updated 3 years ago
- PtrHash minimal perfect hash function☆100Updated this week
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated last week
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆45Mar 9, 2026Updated 4 months ago
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated last year
- ☆24Apr 2, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An extensible and performant aligner and read mapper☆94Jun 29, 2026Updated 2 weeks ago
- ☆16Jun 22, 2023Updated 3 years ago
- ☆33Sep 11, 2025Updated 10 months ago
- The fastest priority queue☆30Jul 7, 2026Updated last week
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Jul 9, 2026Updated last week
- ☆15May 22, 2026Updated last month
- FASTA and FASTQ parsing in Rust☆86Mar 14, 2025Updated last year
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Rust bindings to minimap2 library☆113May 3, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆17Mar 13, 2026Updated 4 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆44Jul 9, 2026Updated last week
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆27Jun 25, 2026Updated 3 weeks ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated last month
- Index kmtricks bf matrices☆49Jul 6, 2026Updated last week
- Fast approximate string searching☆158Updated this week