kmer-counter based on kache-hash
☆16Jul 30, 2026Updated this week
Alternatives and similar repositories for tuna
Users that are interested in tuna are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of a Backpack Quotient Filter☆13Jun 24, 2026Updated last month
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆15Apr 1, 2026Updated 4 months ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 5 months ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 8 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21May 31, 2026Updated 2 months ago
- Bitpacked sequence trait and implementation☆19Jul 7, 2026Updated 3 weeks ago
- A SIMD-accelerated library to compute random minimizers☆46Jul 7, 2026Updated 3 weeks ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆20Jun 23, 2025Updated last year
- ☆27Jun 16, 2026Updated last month
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Compacted and colored de Bruijn graph construction and querying☆99Jul 1, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Jul 29, 2026Updated last week
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 3 weeks ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆45Updated this week
- A k-mer search engine for all Sequence Read Archive public accessions☆44May 13, 2026Updated 2 months ago
- ☆17Apr 6, 2023Updated 3 years ago
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆19Oct 26, 2025Updated 9 months ago
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated 3 weeks ago
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- A (Minimal) Perfect Hash Function based on irregular cuckoo hashing, retrieval, and overloading.☆20Sep 30, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Rust implementation of SSHash☆19Updated this week
- Parallel Construction of Suffix Arrays in Rust☆26Updated this week
- ☆24Apr 2, 2021Updated 5 years ago
- An extensible and performant aligner and read mapper☆99Jul 27, 2026Updated last week
- ☆16Jun 22, 2023Updated 3 years ago
- Mapping sequencing data to De Bruijn graphs, fast☆37Jul 10, 2026Updated 3 weeks ago
- ☆34Sep 11, 2025Updated 10 months ago
- The fastest priority queue☆30Jul 7, 2026Updated 3 weeks ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15May 22, 2026Updated 2 months ago
- FASTA and FASTQ parsing in Rust☆86Mar 14, 2025Updated last year
- Fast approximate string searching☆161Updated this week
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- PtrHash minimal perfect hash function☆100Jul 15, 2026Updated 3 weeks ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆45Mar 9, 2026Updated 4 months ago
- Rust bindings to minimap2 library☆113May 3, 2026Updated 3 months ago