Implementation of the u-index
☆12Jul 19, 2025Updated last year
Alternatives and similar repositories for u-index-rs
Users that are interested in u-index-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 11 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 8 months ago
- ☆14Jul 30, 2026Updated 3 months ago
- Compressed, associative, and exact hash table for k-mers☆11Oct 15, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Minimum plain text representation of kmer sets☆20Jan 30, 2025Updated last year
- Benchmark data structures for kmer sets.☆13Aug 29, 2026Updated 2 months ago
- How many distinct k-mers are there in a sequence?☆11Oct 26, 2026Updated last week
- ☆11Oct 30, 2026Updated last week
- ☆18Oct 12, 2026Updated 3 weeks ago
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- kmer-counter☆19Updated this week
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- A Rust implementation of SSHash☆20Oct 30, 2026Updated last week
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆51Oct 22, 2026Updated 2 weeks ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- ☆15Updated this week
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Aug 26, 2026Updated 2 months ago
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆18Apr 1, 2026Updated 7 months ago
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 4 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Implementation of a Backpack Quotient Filter☆13Jun 24, 2026Updated 4 months ago
- ☆18Apr 6, 2023Updated 3 years ago
- Static Huffman coding☆10Apr 3, 2017Updated 9 years ago
- Bitpacked sequence trait and implementation☆19Oct 26, 2026Updated last week
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Sep 18, 2026Updated last month
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Oct 1, 2026Updated last month
- ☆21Feb 15, 2025Updated last year
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆31Updated this week
- SuperSampler, an efficient scaled size sketching and sketch comparison tool☆11Nov 13, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Compute hash digests for DNA sequences in a FASTA file☆13May 31, 2026Updated 5 months ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 5 months ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆46Mar 9, 2026Updated 7 months ago
- a rust library for high throughput binary encoding of genomic sequences☆12Oct 27, 2026Updated last week
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆20Jun 23, 2025Updated last year