levitsky / identipy
☆10Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for identipy
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆38Updated this week
- ☆14Updated 2 years ago
- Python package for investigating the structural context of PTMs☆27Updated 10 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 months ago
- Matthew The's implementation of MaRaCluster☆11Updated last year
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆55Updated last week
- Democratizing ML in proteomics☆28Updated 2 weeks ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆45Updated this week
- ☆31Updated last month
- Instrument Application Programming Interface☆44Updated last month
- MS/MS prediction for peptides☆22Updated 3 years ago
- Community-curated tutorials and datasets for ML in proteomics☆47Updated 5 months ago
- ☆13Updated 7 months ago
- A python package for fast post translational modification localization, powered by Cython.☆18Updated 10 months ago
- An open-source Python package to unify raw MS data accession and storage.☆18Updated last month
- Open-source C++ and Python module for opening binary timsTOF data files.☆44Updated 3 weeks ago
- Rescoring and spectral library generation pipeline for proteomics.☆33Updated this week
- modular & open DIA search☆51Updated this week
- pyQms, generalized, fast and accurate mass spectrometry data quantification☆28Updated 4 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆35Updated this week
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆30Updated 6 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆76Updated this week
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆27Updated last year
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆19Updated 5 months ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆59Updated this week
- HUPO-PSI Standardized peptidoform notation☆15Updated 8 months ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆24Updated last week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆34Updated 2 weeks ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆42Updated this week
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆41Updated 2 years ago