Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
☆23Apr 8, 2026Updated last week
Alternatives and similar repositories for FlashLFQ
Users that are interested in FlashLFQ are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Oct 2, 2025Updated 6 months ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆125Feb 12, 2026Updated 2 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆50Feb 27, 2025Updated last year
- HUPO-PSI mass spectrometry CV☆40Mar 13, 2026Updated last month
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for summarizing open search results☆16Dec 19, 2025Updated 3 months ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 4 years ago
- A label free quantification tool.☆19Jan 13, 2026Updated 3 months ago
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆45Jun 27, 2022Updated 3 years ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 5 years ago
- CLI toolkit for fast analysis of DIA proteomics experiments and in silico library prediction☆20Updated this week
- Library for mass spectrometry projects☆26Updated this week
- The Git Account of LCMSMethods.org☆11Jun 1, 2019Updated 6 years ago
- A modular JavaScript viewer for mass spectrometry data☆12May 20, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Democratizing ML in proteomics☆52Mar 10, 2026Updated last month
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- ☆12Jan 14, 2023Updated 3 years ago
- Proteomics search & quantification so fast that it feels like magic☆287Mar 31, 2026Updated 2 weeks ago
- ☆15Apr 27, 2022Updated 3 years ago
- MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)☆12Aug 26, 2022Updated 3 years ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆31Mar 27, 2026Updated 2 weeks ago
- A library for QC report based on MultiQC framework☆29Updated this week
- Lipid identification software for discovery LC-MS/MS☆12Mar 29, 2019Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆109Updated this week
- ☆15Jan 27, 2022Updated 4 years ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- A list of tools on proteomics using deep learning☆107May 5, 2024Updated last year
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆31Oct 5, 2022Updated 3 years ago
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Jul 13, 2018Updated 7 years ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Apr 7, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Platform independent command line tool for analysis of mass spectrometry data.☆15Dec 26, 2022Updated 3 years ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆64Apr 8, 2026Updated last week
- The Interactive Peptide Spectral Annotator☆22Jun 9, 2020Updated 5 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Apr 9, 2026Updated last week
- MSDK source code repository☆40Sep 22, 2022Updated 3 years ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Mar 25, 2026Updated 3 weeks ago
- C++ lossless and lossy mass spectrometry compression☆15Sep 16, 2021Updated 4 years ago