Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
☆23Jul 25, 2025Updated 7 months ago
Alternatives and similar repositories for FlashLFQ
Users that are interested in FlashLFQ are comparing it to the libraries listed below
Sorting:
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Oct 2, 2025Updated 5 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Feb 27, 2025Updated last year
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆125Feb 12, 2026Updated 3 weeks ago
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- A label free quantification tool.☆18Jan 13, 2026Updated last month
- HUPO-PSI mass spectrometry CV☆40Feb 20, 2026Updated 2 weeks ago
- Library for mass spectrometry projects☆27Updated this week
- ☆15Apr 27, 2022Updated 3 years ago
- A tool for summarizing open search results☆16Dec 19, 2025Updated 2 months ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 4 years ago
- CLI toolkit for fast analysis of DIA proteomics experiments and in silico library prediction☆19Updated this week
- The Git Account of LCMSMethods.org☆11Jun 1, 2019Updated 6 years ago
- Democratizing ML in proteomics☆50Feb 2, 2026Updated last month
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆46Jun 27, 2022Updated 3 years ago
- A modular JavaScript viewer for mass spectrometry data☆12May 20, 2022Updated 3 years ago
- ☆12Jan 14, 2023Updated 3 years ago
- MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)☆12Aug 26, 2022Updated 3 years ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆30Oct 31, 2025Updated 4 months ago
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- Proteomics search & quantification so fast that it feels like magic☆274Jan 6, 2026Updated 2 months ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆107Updated this week
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆31Oct 5, 2022Updated 3 years ago
- ☆14Jan 27, 2022Updated 4 years ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆13Updated this week
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Jul 13, 2018Updated 7 years ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 5 years ago
- A list of tools on proteomics using deep learning☆106May 5, 2024Updated last year
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated this week
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Feb 10, 2026Updated 3 weeks ago
- Platform independent command line tool for analysis of mass spectrometry data.☆15Dec 26, 2022Updated 3 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Feb 19, 2026Updated 2 weeks ago
- Instrument Application Programming Interface☆51Sep 29, 2025Updated 5 months ago
- MSDK source code repository☆40Sep 22, 2022Updated 3 years ago
- The Interactive Peptide Spectral Annotator☆21Jun 9, 2020Updated 5 years ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Feb 11, 2026Updated 3 weeks ago
- Mass spectrometry data visualization☆38Nov 30, 2020Updated 5 years ago