Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
☆23Apr 8, 2026Updated 3 weeks ago
Alternatives and similar repositories for FlashLFQ
Users that are interested in FlashLFQ are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Apr 13, 2026Updated 3 weeks ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆126Apr 19, 2026Updated 2 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆50Feb 27, 2025Updated last year
- HUPO-PSI mass spectrometry CV☆41Apr 24, 2026Updated last week
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for summarizing open search results☆16Apr 22, 2026Updated 2 weeks ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 5 years ago
- A label free quantification tool.☆19Jan 13, 2026Updated 3 months ago
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆45Jun 27, 2022Updated 3 years ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 5 years ago
- CLI toolkit for fast analysis of DIA proteomics experiments and in silico library prediction☆21Updated this week
- Library for mass spectrometry projects☆26Updated this week
- The Git Account of LCMSMethods.org☆11Jun 1, 2019Updated 6 years ago
- A modular JavaScript viewer for mass spectrometry data☆12May 20, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Democratizing ML in proteomics☆52Mar 10, 2026Updated last month
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- ☆12Jan 14, 2023Updated 3 years ago
- Proteomics search & quantification so fast that it feels like magic☆288Apr 21, 2026Updated 2 weeks ago
- ☆15Apr 27, 2022Updated 4 years ago
- MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)☆12Aug 26, 2022Updated 3 years ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆31Mar 27, 2026Updated last month
- A library for QC report based on MultiQC framework☆30Apr 14, 2026Updated 3 weeks ago
- Lipid identification software for discovery LC-MS/MS☆12Mar 29, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆109Updated this week
- ☆15Jan 27, 2022Updated 4 years ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- A list of tools on proteomics using deep learning☆108May 5, 2024Updated 2 years ago
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆31Oct 5, 2022Updated 3 years ago
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Jul 13, 2018Updated 7 years ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated this week
- Platform independent command line tool for analysis of mass spectrometry data.☆15Dec 26, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆64Apr 11, 2026Updated 3 weeks ago
- The Interactive Peptide Spectral Annotator☆22Jun 9, 2020Updated 5 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Apr 29, 2026Updated last week
- MSDK source code repository☆40Sep 22, 2022Updated 3 years ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Mar 25, 2026Updated last month
- C++ lossless and lossy mass spectrometry compression☆15Sep 16, 2021Updated 4 years ago
- Analysis platform for large-scale dose-dependent data☆28Nov 25, 2025Updated 5 months ago