Pytorch implementation of DeepNovoV2, a state-of-the-art de novo peptide sequencing model.
☆27May 21, 2019Updated 7 years ago
Alternatives and similar repositories for DeepNovoV2
Users that are interested in DeepNovoV2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De novo peptide sequencing for DDA and DIA by deep learning☆40Nov 26, 2020Updated 5 years ago
- pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning☆43Aug 22, 2019Updated 6 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆45Feb 23, 2024Updated 2 years ago
- A Python package for peptide sequence analysis built around ProForma 2.1 notation. Calculate masses, generate fragments, predict isotopic…☆17May 22, 2026Updated 3 weeks ago
- Protein Identification with Deep Learning☆102Nov 27, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A standard library for biological research.☆37Sep 2, 2025Updated 9 months ago
- ☆14Jul 12, 2021Updated 4 years ago
- ☆23Jun 11, 2026Updated last week
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Aug 7, 2020Updated 5 years ago
- ☆12May 4, 2026Updated last month
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆189Jun 8, 2026Updated last week
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆13Feb 8, 2021Updated 5 years ago
- ☆10Jun 10, 2024Updated 2 years ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆93Aug 17, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Paper collection about de novo peptide Sequening☆24Feb 5, 2025Updated last year
- ☆18Oct 16, 2025Updated 8 months ago
- Generator and regressor neural networks for antimicrobial peptides☆25Jan 30, 2024Updated 2 years ago
- ☆22Oct 11, 2021Updated 4 years ago
- SciQAG is a novel framework for automatically generating high-quality science question-answer pairs from a large corpus of scientific lit…☆34Mar 24, 2025Updated last year
- MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.☆15Jul 23, 2020Updated 5 years ago
- Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.☆79Mar 25, 2023Updated 3 years ago
- Deep Learning Based Tumor Type Classification Using Gene Expression Data☆27Sep 17, 2024Updated last year
- Scripts used for Mulligan et al. (2020): Computationally-designed peptide macrocycle inhibitors of New Delhi metallo-beta-lactamase 1☆20Aug 20, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆20Apr 12, 2019Updated 7 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Apr 22, 2026Updated last month
- ☆12Mar 28, 2022Updated 4 years ago
- HLA-I ligand predictor☆46Mar 19, 2026Updated 2 months ago
- Codebase for SEFS: Self-Supervision Enhanced Feature Selection with Correlated Gates☆26Sep 11, 2023Updated 2 years ago
- ☆17Dec 13, 2020Updated 5 years ago
- A easy-to-use Python API for Primer3 primer design.☆16Nov 10, 2022Updated 3 years ago
- ☆69Jun 11, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Spatiotemporal identification of druggable binding sites using deep learning☆22Mar 16, 2021Updated 5 years ago
- Benchmark for LLM-based Agents in Computational Biology☆116Oct 6, 2025Updated 8 months ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- RLMM is a reinforcement learning env for molecular modeling (currently only protein-ligand docking).☆11Nov 14, 2022Updated 3 years ago
- Code of the all the data augmentation [ Based on our survey, that will soon be published ]☆10Jul 5, 2023Updated 2 years ago
- [Nature Machine Intelligence], the first open de novo sequencing and open database search rescoring deep learning model.☆40May 30, 2026Updated 2 weeks ago
- Scoring functions to compare MS/MS spectra☆11Feb 22, 2017Updated 9 years ago