IBPA / DeepPep
Deep proteome inference from peptide profiles
☆13Updated 4 years ago
Alternatives and similar repositories for DeepPep:
Users that are interested in DeepPep are comparing it to the libraries listed below
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆33Updated this week
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- ☆14Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- Integration ribosome profiling - mass spectrometry☆14Updated last month
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated this week
- 3D hotspot mutation proximity analysis tool☆46Updated last year
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- Public repository for building and analyzing protein complex maps☆11Updated 8 years ago
- Summary statistics for repertoires☆16Updated last year
- Deep learning model to predict degron sequences☆19Updated last year
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆35Updated 7 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆35Updated 3 years ago
- A Python package for gene network analysis☆32Updated 2 years ago
- Code to run OncoSig Analyses☆18Updated 4 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆29Updated 5 months ago
- Single cell proteomics data processing☆25Updated 3 months ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 5 years ago
- Collection of scripts for pre- and postprocessing neoantigen discovery calls.☆9Updated 5 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 5 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆12Updated last year
- User-submitted RNA-seq data analysis tools for BioJupies.☆19Updated 3 years ago
- RNA-Seq pipeline☆34Updated 9 years ago
- ☆20Updated 4 months ago
- This is the public repository for the EPIC tool.☆17Updated 2 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆28Updated 9 months ago