IBPA / DeepPepLinks
Deep proteome inference from peptide profiles
☆13Updated 5 years ago
Alternatives and similar repositories for DeepPep
Users that are interested in DeepPep are comparing it to the libraries listed below
Sorting:
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Updated 2 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆42Updated last week
- Code for the CRISPOR article, all data and code to create figures and analysis☆47Updated 9 years ago
- A collection of useful functions for bioinformatics data analysis☆24Updated last month
- ☆42Updated 7 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 11 months ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 4 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆34Updated 10 months ago
- Multi-Omics Peptide Generator☆30Updated 2 months ago
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- Integration ribosome profiling - mass spectrometry☆15Updated 2 months ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆38Updated 8 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆18Updated 5 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- Absolute quantification package based on quantms.io☆16Updated 3 months ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆66Updated 4 years ago
- ☆33Updated 3 years ago
- ☆26Updated 4 years ago
- 3D hotspot mutation proximity analysis tool☆52Updated 2 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Updated 2 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- ☆24Updated last month
- DRUGZ software☆25Updated 4 years ago
- ☆38Updated 2 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Updated 3 years ago
- IPAW: a Nextflow workflow for proteogenomics☆29Updated last year