Deep proteome inference from peptide profiles
☆14Jul 16, 2020Updated 6 years ago
Alternatives and similar repositories for DeepPep
Users that are interested in DeepPep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Integration ribosome profiling - mass spectrometry☆15Nov 4, 2025Updated 11 months ago
- Unofficial Gurobi Torch bindings.☆10Jan 11, 2017Updated 9 years ago
- a pipeline for running MD simulations in the presence of probe molecules for druggability assessment☆12Dec 10, 2025Updated 10 months ago
- Estimate PTM hotspots in protein sequence alignments☆16Feb 6, 2019Updated 7 years ago
- ☆13Oct 14, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Jun 25, 2026Updated 4 months ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 8 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Feb 12, 2016Updated 10 years ago
- A search engine for the identification of cross-linked protein complexes or proteomes from mass spectrometry data.☆14Sep 17, 2026Updated last month
- Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering☆12May 4, 2019Updated 7 years ago
- Find Co-Abundant Groups of Genes☆12Aug 3, 2020Updated 6 years ago
- R package for analysing proteomics data☆49Apr 17, 2023Updated 3 years ago
- Dirichlet-Multinomial Bayesian Variable Selection☆14Oct 11, 2026Updated 2 weeks ago
- python scripts for proteogenomics analysis☆11Oct 17, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Test for COVID-19 with the help of OT-2 robots☆12Jun 7, 2020Updated 6 years ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆80Updated this week
- ProteoStorm: An Ultrafast Metaproteomics Database Search Framework☆11Jul 15, 2023Updated 3 years ago
- This repository contains FAQs (Frequently Asked Questions) for genome in a bottle project☆10Sep 28, 2018Updated 8 years ago
- Public repository for building and analyzing protein complex maps☆12Dec 6, 2016Updated 9 years ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 5 years ago
- ☆18Jun 3, 2020Updated 6 years ago
- DART-ID: retention time alignment and peptide identification confidence updates☆19Mar 17, 2025Updated last year
- Using Machine Learning to Identify Glioblastoma patients with NF1 inactivation☆11Dec 19, 2016Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆39Apr 21, 2026Updated 6 months ago
- http://tinyurl.com/cruk-shiny☆10Sep 13, 2017Updated 9 years ago
- ☆11Aug 3, 2018Updated 8 years ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Feb 6, 2018Updated 8 years ago
- ☆13Mar 19, 2024Updated 2 years ago
- Converter functions for the MSstats package☆12Updated this week
- Source code and data for "Pan-cancer analysis of bi-allelic alterations in homologous recombination (HR) DNA repair genes" ; See manuscri…☆13May 26, 2017Updated 9 years ago
- Classifying RNAs as lncRNAs by ensemble machine learning algorithms☆10Dec 8, 2022Updated 3 years ago
- Source code of the paper "DeepGene: an advanced cancer type classifier based on deep learning and somatic point mutations"☆13Sep 7, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A curated list of awesome deep learning applications in the field of computational biology☆11Aug 3, 2016Updated 10 years ago
- The ProteoWizard Library and Tools are a set of modular and extensible open-source, cross-platform tools and software libraries that faci…☆22Aug 25, 2023Updated 3 years ago
- Course on good principles & practices in Data Management (https://tinyurl.com/cruk-myrd)☆20May 2, 2023Updated 3 years ago
- A pipeline for whole genome assembly☆18Apr 21, 2022Updated 4 years ago
- Stack denoising autoencoder (SdA) code in "Deep learning based functional site-level and UTR-level human miRNA target prediction"☆11May 7, 2019Updated 7 years ago
- A command-line interface and python module for R's GSVA bioconductor package☆14Jul 8, 2018Updated 8 years ago
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Mar 18, 2024Updated 2 years ago