samgoldman97 / enz-pred

Related projects: ⓘ

• samgoldman97 / enzyme-datasets
  Enzyme datasets used to benchmark enzyme-substrate promiscuity models
  ☆29Updated 3 years ago
• ohuelab / ColabDesign-cyclic-binder
  ☆22Updated last year
• Furman-Lab / PatchMAN
  ☆24Updated last month
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆34Updated 5 months ago
• jsunn-y / CARE
  CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes
  ☆20Updated 2 weeks ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆23Updated 10 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆17Updated 6 months ago
• Jnelen / DiffDockHPC
  DiffDock implementation that adds support for HPC execution using Slurm and Singularity
  ☆23Updated this week
• KULL-Centre / _2024_cagiada_stability
  ☆34Updated 6 months ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆16Updated 2 months ago
• tommyhuangthu / EvoEF2
  a fast and accurate physical energy function extended from EvoEF for protein sequence design
  ☆24Updated last year
• BioComputingUP / ring-pymol
  This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
  ☆23Updated 7 months ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆18Updated last month
• Nucleus2014 / protease-gcnn-pytorch
  ☆20Updated 10 months ago
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆15Updated 8 months ago
• NasimAbdollahi / NodeCoder
  NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
  ☆28Updated 4 months ago
• matteoferla / rdkit_to_params
  Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file
  ☆22Updated 5 months ago
• fteufel / alphafold-peptide-receptors
  Identifying peptide-receptor interactions using AlphaFold-Multimer
  ☆18Updated last year
• AndersJing / RaptorX-Single
  ☆17Updated 4 months ago
• RosettaCommons / Rosetta-DL
  A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons
  ☆30Updated last year
• NRGlab / Surfaces
  ☆11Updated 3 months ago
• vmullig / ndm1_design_scripts
  Scripts used for Mulligan et al. (2020): Computationally-designed peptide macrocycle inhibitors of New Delhi metallo-beta-lactamase 1
  ☆15Updated 3 years ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆25Updated last year
• liuyf020419 / ABACUS-R
  ☆11Updated this week
• bene837 / af2seq
  ☆31Updated this week
• AspirinCode / iPPIGAN
  De novo molecular design with deep molecular generative models for protein-protein interaction(PPI) inhibitors
  ☆17Updated 11 months ago
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆29Updated 6 months ago
• huhlim / alphafold-multistate
  ☆29Updated 5 months ago
• strauchlab / iNNterfaceDesign
  ☆19Updated last year
• Protein-Engineering-Framework / PyPEF
  PyPEF – Pythonic Protein Engineering Framework
  ☆20Updated last month