Alternatives and similar repositories for MSLibrarian:

Users that are interested in MSLibrarian are comparing it to the libraries listed below

• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆21Updated this week
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated last month
• ZhuMSLab / DecoMetDIA
  ☆11Updated 2 years ago
• markmipt / ms1searchpy
  ☆10Updated last week
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆9Updated 3 years ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆34Updated 3 weeks ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆21Updated last week
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆42Updated 3 weeks ago
• vsegurar / DeepMSPeptide
  ☆16Updated 5 years ago
• stanstrup / commonMZ
  A collection of common mz values found in mass spectrometry.
  ☆19Updated 9 months ago
• EMSL-Computing / PeakDecoder
  A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
  ☆14Updated last year
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆26Updated 6 years ago
• compomics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated this week
• fgcz / rawDiag
  Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package
  ☆36Updated 11 months ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆41Updated this week
• EuBIC / EuBIC2023
  EuBIC 2023 developer's meeting
  ☆13Updated 2 years ago
• zhengfj1994 / MetEx
  MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.
  ☆16Updated last year
• statisticalbiotechnology / quandenser
  QUANtification by Distillation for ENhanced Signals with Error Regulation
  ☆10Updated 2 years ago
• shuzhao-li-lab / asari
  asari, metabolomics data preprocessing
  ☆45Updated last week
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆40Updated 10 months ago
• IFIproteomics / LFQbench
  ☆24Updated 2 years ago
• Roestlab / DIAlignR
  This is a R package for alignment of DIA mass-spec data
  ☆12Updated 4 years ago
• xia-lab / OptiLCMS
  R package for optimized LC-MS spectra processing
  ☆24Updated 4 months ago
• computational-metabolomics / msPurity
  R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
  ☆15Updated 10 months ago
• pattilab / DecoID
  Metabolomics software for database-assisted deconvolution of MS/MS spectra
  ☆18Updated last year
• RogerGinBer / RHermes
  RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
  ☆25Updated last week
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• rformassspectrometry / MsCoreUtils
  Core Utils for Mass Spectrometry Data
  ☆16Updated last week
• kusterlab / universal_spectrum_explorer
  ☆15Updated 3 years ago
• mafreitas / tdf2mzml
  ☆26Updated last year