Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.
☆11Mar 17, 2025Updated last year
Alternatives and similar repositories for plexDIA
Users that are interested in plexDIA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Access Orbitrap data in R lang using C# .NET assembly - bioconductor package☆61Feb 10, 2026Updated 8 months ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Oct 5, 2026Updated 3 weeks ago
- ☆18Apr 17, 2025Updated last year
- Report processing and protein quantification for MS-based proteomics☆57Jun 29, 2023Updated 3 years ago
- Single-cell data analysis☆16May 24, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Thermo XCalibur Method (.meth) file reader, extracter, and converter command-line program for mass spectrometry researchers.☆13Jan 13, 2019Updated 7 years ago
- HUMOS is a web application aimed to help teaching Orbitrap mass spectrometry. HUMOS models a mass spectrum of a peptide mixture allowing …☆11Mar 10, 2025Updated last year
- The tools that constitute a nontargeted LCMS metabolomics data processing pipeline, created and used by the Broad Institute Metabolomics …☆15Updated this week
- ☆13Oct 14, 2026Updated 2 weeks ago
- Generative SDR demo☆13Jul 20, 2016Updated 10 years ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆34Mar 21, 2026Updated 7 months ago
- Jupyter demo repository for PancakesCon2020☆16Mar 23, 2020Updated 6 years ago
- Knowledge-guided multilayer network approach is executed in MetDNA2☆16Nov 5, 2022Updated 3 years ago
- 📈A 'ggplot2' Extension for Visualizing Density, Distribution, Hazard, or Survival Functions using the 'logspline' Package☆12Jun 18, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Organic/biological mass spectrometry data analysis (development version).☆33Jan 27, 2026Updated 9 months ago
- ggplot extension to visualize SOMs network☆13Jan 15, 2020Updated 6 years ago
- ☆10Dec 6, 2022Updated 3 years ago
- MetNormalizer is used to normalize large scale metabolomics data.☆22Mar 3, 2021Updated 5 years ago
- curly braces in ggplot2.☆13Jul 14, 2025Updated last year
- Python script to perform fingerprinting and calculate Tanimoto similarities on multiple compounds.☆22Mar 29, 2025Updated last year
- Pipeline for automatic processing and quality control of mass spectrometry data☆14Sep 25, 2026Updated last month
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated 2 years ago
- Material for the Pearson × O’Reilly Live Training Session "Hands-On Data Visualization with ggplot2: Concepts"☆11Aug 29, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GSEA plots in ggplot2☆10Jan 21, 2024Updated 2 years ago
- MetScale: snakemake workflows to scale metagenome analyses☆19May 15, 2025Updated last year
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated 2 years ago
- ☆15Dec 8, 2022Updated 3 years ago
- package for analysis of ligand and receptor connectivity between populations in scRNA-seq data☆13May 20, 2022Updated 4 years ago
- Hyperbolic decision trees☆14Jun 6, 2026Updated 4 months ago
- Convert image or video to ASCII art☆10Mar 6, 2017Updated 9 years ago
- AutoTag-YOLOv8 is an object detection project that uses the YOLOv8 model and leverages the power of SAM and DINGO models for automatic la…☆13May 3, 2023Updated 3 years ago
- Kinase-Substrate Enrichment Analysis (KSEA) App☆10May 2, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Mar 1, 2024Updated 2 years ago
- ggplot2 geoms to outline groups of data points☆16Nov 24, 2023Updated 2 years ago
- An easy-to-use and interactive web application for FragPipe☆15Mar 8, 2026Updated 7 months ago
- This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This proj…☆37Jul 3, 2026Updated 3 months ago
- C++ lossless and lossy mass spectrometry compression☆15Sep 16, 2021Updated 5 years ago
- ☆13Jan 23, 2024Updated 2 years ago
- Spatially Variable Profiler☆12Aug 18, 2026Updated 2 months ago