Alternatives and similar repositories for plexDIA:

Users that are interested in plexDIA are comparing it to the libraries listed below

• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆10Updated 3 years ago
• markmipt / ms1searchpy
  ☆10Updated last week
• CCprofiler / CCprofiler
  Analysis of co-fractionation MS datasets
  ☆11Updated 3 years ago
• stanstrup / commonMZ
  A collection of common mz values found in mass spectrometry.
  ☆19Updated 10 months ago
• ZhuMetLab / MetDNA2
  Knowledge-guided multilayer network approach is executed in MetDNA2
  ☆16Updated 2 years ago
• ZhuMSLab / DecoMetDIA
  ☆11Updated 2 years ago
• vsegurar / DeepMSPeptide
  ☆16Updated 5 years ago
• zmahnoor14 / MAW
  Metabolome Annotation Workflow
  ☆25Updated last year
• xia-lab / OptiLCMS
  R package for optimized LC-MS spectra processing
  ☆25Updated 2 weeks ago
• EMSL-Computing / PeakDecoder
  A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
  ☆14Updated 2 years ago
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆46Updated last year
• zhengfj1994 / MetEx
  MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.
  ☆16Updated last year
• pattilab / DecoID
  Metabolomics software for database-assisted deconvolution of MS/MS spectra
  ☆18Updated last year
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆26Updated 6 years ago
• computational-metabolomics / msPurity
  R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
  ☆16Updated 11 months ago
• systemsomicslab / mtbinfo.github.io
  ☆26Updated 9 months ago
• jessegmeyerlab / proteomics-tutorial
  ☆59Updated 11 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated 2 months ago
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆25Updated last year
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆27Updated last year
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆28Updated 9 months ago
• shuzhao-li-lab / asari
  asari, metabolomics data preprocessing
  ☆48Updated last month
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆40Updated 11 months ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 3 months ago
• MonashProteomics / FragPipe-Analyst
  ☆17Updated 2 weeks ago
• zamboni-lab / SLAW
  Scalable and self-optimizing processing workflow for untargeted LC-MS
  ☆28Updated 9 months ago
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆20Updated 2 weeks ago
• RogerGinBer / RHermes
  RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
  ☆26Updated last month
• biocore / q2-qemistree
  Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
  ☆32Updated 2 years ago
• eMetaboHUB / MS-CleanR
  ☆25Updated last year