Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.
☆12Mar 17, 2025Updated last year
Alternatives and similar repositories for plexDIA
Users that are interested in plexDIA are comparing it to the libraries listed below
Sorting:
- Access Orbitrap data in R lang using C# .NET assembly - bioconductor package☆61Feb 10, 2026Updated last month
- Report processing and protein quantification for MS-based proteomics☆52Jun 29, 2023Updated 2 years ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆30Jul 28, 2025Updated 7 months ago
- A Thermo XCalibur Method (.meth) file reader, extracter, and converter command-line program for mass spectrometry researchers.☆13Jan 13, 2019Updated 7 years ago
- HUMOS is a web application aimed to help teaching Orbitrap mass spectrometry. HUMOS models a mass spectrum of a peptide mixture allowing …☆11Mar 10, 2025Updated last year
- Single-cell data analysis☆15Sep 11, 2025Updated 6 months ago
- ☆12Mar 3, 2026Updated 2 weeks ago
- Generative SDR demo☆13Jul 20, 2016Updated 9 years ago
- 📈A 'ggplot2' Extension for Visualizing Density, Distribution, Hazard, or Survival Functions using the 'logspline' Package☆12Jun 18, 2019Updated 6 years ago
- Knowledge-guided multilayer network approach is executed in MetDNA2☆16Nov 5, 2022Updated 3 years ago
- Jupyter demo repository for PancakesCon2020☆16Mar 23, 2020Updated 5 years ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆33Jan 20, 2026Updated last month
- Material for the Pearson × O’Reilly Live Training Session "Hands-On Data Visualization with ggplot2: Concepts"☆11Aug 29, 2023Updated 2 years ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated last year
- Python script to perform fingerprinting and calculate Tanimoto similarities on multiple compounds.☆21Mar 29, 2025Updated 11 months ago
- MetScale: snakemake workflows to scale metagenome analyses☆19May 15, 2025Updated 10 months ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated last year
- MetNormalizer is used to normalize large scale metabolomics data.☆22Mar 3, 2021Updated 5 years ago
- Bob Pruzek and Jim Helmreich's implementation of Elemental Graphics for Analysis of Variance☆17Mar 8, 2025Updated last year
- An easy-to-use and interactive web application for FragPipe☆13Mar 8, 2026Updated last week
- IPHOMED☆11Jun 11, 2025Updated 9 months ago
- C++ lossless and lossy mass spectrometry compression☆13Sep 16, 2021Updated 4 years ago
- AutoTag-YOLOv8 is an object detection project that uses the YOLOv8 model and leverages the power of SAM and DINGO models for automatic la…☆13May 3, 2023Updated 2 years ago
- ☆29Jan 15, 2026Updated 2 months ago
- An Autodesk Maya plugin for modelling DNA based structures☆19Jun 11, 2014Updated 11 years ago
- ☆15Dec 8, 2022Updated 3 years ago
- Implementation of multiplex Leiden for analysis of spatial omics data☆17Feb 2, 2026Updated last month
- Package for adding some multivariate visualizations to ggplot2☆15Sep 7, 2025Updated 6 months ago
- This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This proj…☆31Nov 24, 2024Updated last year
- ☆13Jan 23, 2024Updated 2 years ago
- Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments☆13Feb 26, 2026Updated 3 weeks ago
- Chemical Similarity Enrichment analysis of metabolomics datasets☆30Jul 19, 2024Updated last year
- Kinase-Substrate Enrichment Analysis (KSEA) App☆10May 2, 2017Updated 8 years ago
- ggplot2 geoms to outline groups of data points☆16Nov 24, 2023Updated 2 years ago
- Phylogenetic plots for R and ggplot☆27Oct 3, 2012Updated 13 years ago
- Cleavage of polypeptide sequences☆12Oct 14, 2025Updated 5 months ago
- Models the Reactome knowledgebase into a interconnected graph☆20Mar 4, 2026Updated 2 weeks ago
- ggplots for nested data☆10Jul 17, 2024Updated last year
- Defined MRM transitions from untargeted metabolomics data☆11Nov 13, 2023Updated 2 years ago